RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA763243" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_kingdom 2

tax_superkingdom 1

  • Archaea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA763243 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10948171 10948171 PRJNA763243_P_NODE_72549_length_208_cov_6.948148_g72203_i0 PRJNA763243 72549 208 6.948148 14.45214784 Candidatus Nitrosocosmicus franklandianus 1798806 Archaea Archaea 309 9.79e-80   NTclustered gi|1599533355|emb|LR216287.1| 1798806 g72203 i0 94.118 23.6105769230769 204 11 98 1 1 203 2055 2258 Candidatus Nitrosocosmicus franklandus isolate NFRAN1 genome assembly, chromosome: NFRAN blastn 4911 309 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus franklandianus
14772801 14772801 PRJNA763243_P_NODE_652_length_1444_cov_19.588621_g531_i0 PRJNA763243 652 1444 19.588621 282.85968724 Methanimicrococcus stummii 3028294 Archaea Archaea 2617 0   NTclustered gi|2444509770|gb|OQ442332.1| 3028294 g531 i0 99.445 101.673822714681 1441 8 99 0 1 1441 1441 1 Methanimicrococcus stummii strain Es2 16S ribosomal RNA gene, partial sequence blastn 146817 2617 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanimicrococcus Methanimicrococcus stummii
19057103 19057103 PRJNA763243_P_NODE_70435_length_218_cov_7.544828_g70089_i0 PRJNA763243 70435 218 7.544828 16.44772504 Methanosarcina 2207 Archaea Archaea 327 2.86e-85   NTclustered gi|2047643091|dbj|AP019780.1| 2209 g70089 i0 93.981 18.7522935779816 216 13 99 0 2 217 3147944 3147729 Methanosarcina mazei TMA DNA, complete genome blastn 4088 327 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei
21607572 21607572 PRJNA763243_P_NODE_97_length_2954_cov_21.114891_g70_i0 PRJNA763243 97 2954 21.114891 623.73388014 Methanimicrococcus 91559 Archaea Archaea 4649 0   NTclustered gi|2591779694|gb|CP131062.1| 3028294 g70 i0 98.484 229.692620176033 2638 38 99 2 4 2640 1479504 1482140 Methanimicrococcus stummii strain Es2 chromosome, complete genome blastn 678512 4662 0.997211497211497 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanimicrococcus Methanimicrococcus stummii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;