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contig_metadata

18 rows where analysis = "blastn", bioproject = "PRJNA763243" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 18 ✖

tax_clade 1

bioproject 1

  • PRJNA763243 · 18 ✖

analysis 1

  • blastn · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2018748 2018748 PRJNA763243_P_NODE_16222_length_385_cov_1.608974_g15877_i0 PRJNA763243 16222 385 1.608974 6.1945499 Paralagenidium karlingii 1440115 SAR_Eukaryotes SAR_Eukaryotes 111 5.98e-20   NTclustered gi|2554484921|ref|NC_080886.1| 1440115 g15877 i0 83.2 24.8753246753247 125 17 32 4 257 380 41793 41672 Paralagenidium karlingii isolate 19-09020 mitochondrion, complete genome blastn 9577 111 1 Eukaryota Sar   Oomycota Peronosporomycetes     Paralagenidium Paralagenidium karlingii
2480736 2480736 PRJNA763243_P_NODE_5422_length_608_cov_522.652336_g5099_i0 PRJNA763243 5422 608 522.652336 3177.72620288 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 1079 0   NTclustered gi|166048041|emb|CU364162.1| 100861 g5099 i0 98.843 99.6809210526316 605 7 99 0 4 608 72 676 Aphanomyces euteiches cDNA blastn 60606 1079 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
4571252 4571252 PRJNA763243_P_NODE_24064_length_328_cov_2.619608_g23718_i0 PRJNA763243 24064 328 2.619608 8.59231424 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 351 2.72e-92   NTclustered gi|695434207|ref|XM_009533074.1| 67593 g23718 i0 86.462 50.2713414634146 325 38 98 6 4 325 324 3 Phytophthora sojae hypothetical protein partial mRNA blastn 16489 351 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
5847540 5847540 PRJNA763243_P_NODE_69605_length_222_cov_12.046980_g69259_i0 PRJNA763243 69605 222 12.04698 26.7442956 Achlya bisexualis 4766 SAR_Eukaryotes SAR_Eukaryotes 265 2.32e-66   NTclustered gi|2289|emb|X59936.1| 4766 g69259 i0 88.837 97.3693693693694 215 24 97 0 3 217 251 37 A.bisexualis gene for actin blastn 21616 265 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya bisexualis
5847660 5847660 PRJNA763243_P_NODE_74965_length_198_cov_6.512000_g74619_i0 PRJNA763243 74965 198 6.512 12.89376 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 95.3 2.81e-15   NTclustered gi|695462266|ref|XM_009540112.1| 67593 g74619 i0 81.982 10.020202020202 111 20 56 0 88 198 174 64 Phytophthora sojae hypothetical protein mRNA blastn 1984 95.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
7121554 7121554 PRJNA763243_P_NODE_20086_length_353_cov_1.375000_g19740_i0 PRJNA763243 20086 353 1.375 4.85375 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.009   NTclustered gi|695395908|ref|XM_009523000.1| 67593 g19740 i0 87.5 0.135977337110482 48 4 13 2 87 133 1420 1466 Phytophthora sojae hypothetical protein partial mRNA blastn 48 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
7122542 7122542 PRJNA763243_P_NODE_63566_length_241_cov_0.916667_g63220_i0 PRJNA763243 63566 241 0.916667 2.20916747 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 198 2.63e-46   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g63220 i0 82.805 69.7634854771784 221 38 92 0 4 224 48841 49061 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 16813 198 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
8858449 8858449 PRJNA763243_P_NODE_69307_length_223_cov_63.146667_g68961_i0 PRJNA763243 69307 223 63.146667 140.81706741 Aquastella 1495611 SAR_Eukaryotes SAR_Eukaryotes 403 4.74e-108   NTclustered gi|629632980|gb|KF294792.1| 1495612 g68961 i0 100 97.7264573991031 218 0 98 0 4 221 1367 1584 Aquastella attenuata isolate SL45 18S ribosomal RNA gene, partial sequence blastn 21793 403 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aquastella Aquastella attenuata
9672496 9672496 PRJNA763243_P_NODE_72628_length_207_cov_360.761194_g72282_i0 PRJNA763243 72628 207 360.761194 746.77567158 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 361 2.65e-95   NTclustered gi|698793876|ref|XR_717098.1| 112090 g72282 i0 98.529 98.2995169082126 204 3 99 0 4 207 1883 2086 Aphanomyces astaci 28S ribosomal RNA rRNA blastn 20348 361 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
10947839 10947839 PRJNA763243_P_NODE_58049_length_245_cov_3.959302_g57703_i0 PRJNA763243 58049 245 3.959302 9.7002899 Paralagenidium karlingii 1440115 SAR_Eukaryotes SAR_Eukaryotes 106 1.67e-18   NTclustered gi|2554484921|ref|NC_080886.1| 1440115 g57703 i0 87.912 13.4734693877551 91 9 37 2 156 245 41764 41675 Paralagenidium karlingii isolate 19-09020 mitochondrion, complete genome blastn 3301 106 1 Eukaryota Sar   Oomycota Peronosporomycetes     Paralagenidium Paralagenidium karlingii
11409131 11409131 PRJNA763243_P_NODE_66729_length_232_cov_7.301887_g66383_i0 PRJNA763243 66729 232 7.301887 16.94037784 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 180 9.12e-41   NTclustered gi|2795037587|ref|XM_067935188.1| 4785 g66383 i0 83.59 13.3965517241379 195 28 83 4 10 202 193 1 Phytophthora cinnamomi 60S ribosomal protein L5 (IUM83_10672), partial mRNA blastn 3108 180 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
13497934 13497934 PRJNA763243_P_NODE_991_length_1217_cov_8.604021_g832_i0 PRJNA763243 991 1217 8.604021 104.71093557 Achlya ambisexualis 4768 SAR_Eukaryotes SAR_Eukaryotes 701 0   NTclustered gi|22086549|gb|AF402100.1| 4768 g832 i0 78.215 83.2752670501232 1143 215 93 30 1 1126 1147 22 Achlya ambisexualis isolate JS854 heat shock protein Hsp90 mRNA, complete cds blastn 101346 701 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya ambisexualis
16046622 16046622 PRJNA763243_P_NODE_70893_length_216_cov_4.608392_g70547_i0 PRJNA763243 70893 216 4.608392 9.95412672 Pseudoperonospora urticae 162119 SAR_Eukaryotes SAR_Eukaryotes 388 1.28e-103   NTclustered gi|33520221|gb|AY273966.1| 162119 g70547 i0 99.531 98.6203703703704 213 1 99 0 1 213 249 37 Pseudoperonospora urticae large subunit ribosomal RNA gene, partial sequence blastn 21302 388 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Pseudoperonospora Pseudoperonospora urticae
17320938 17320938 PRJNA763243_P_NODE_114_length_2815_cov_60.446025_g84_i0 PRJNA763243 114 2815 60.446025 1701.55560375 Phytophthora hedraiandra 295481 SAR_Eukaryotes SAR_Eukaryotes 536 6.62e-147   NTclustered gi|2314988701|ref|NC_067067.1| 295481 g84 i0 75.059 40.4891651865009 1263 260 44 48 1 1235 33218 31983 Phytophthora hedraiandra voucher CBS111725 mitochondrion, complete genome blastn 113977 536 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora hedraiandra
17782855 17782855 PRJNA763243_P_NODE_38134_length_281_cov_21.298077_g37788_i0 PRJNA763243 38134 281 21.298077 59.84759637 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 462 1.01e-125   NTclustered gi|227430058|emb|FM999232.1| 281399 g37788 i0 96.763 97.8967971530249 278 7 99 2 4 280 145 421 Aphanomyces frigidophilus 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene (partial), isolate SAP233 blastn 27509 462 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces frigidophilus
21607518 21607518 PRJNA763243_P_NODE_6897_length_551_cov_6.947699_g6560_i0 PRJNA763243 6897 551 6.947699 38.28182149 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 102 5.31e-17   NTclustered gi|698793878|ref|XR_717100.1| 112090 g6560 i0 80.916 21.0344827586207 131 24 24 1 395 524 3791 3661 Aphanomyces astaci 28S ribosomal RNA rRNA blastn 11590 102 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
22421440 22421440 PRJNA763243_P_NODE_8758_length_500_cov_19.772834_g8416_i0 PRJNA763243 8758 500 19.772834 98.86417 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 5.72e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g8416 i0 80.533 67.634 375 65 74 4 129 496 441 68 Aphanomyces astaci polyubiquitin mRNA blastn 33817 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
23696822 23696822 PRJNA763243_P_NODE_65439_length_236_cov_11.496933_g65093_i0 PRJNA763243 65439 236 11.496933 27.13276188 Aphanomyces sp. APH2 637497 SAR_Eukaryotes SAR_Eukaryotes 381 2.379999999999999e-101   NTclustered gi|226818991|gb|FJ794896.1| 637497 g65093 i0 97.748 93.8940677966102 222 3 93 1 14 233 1724 1503 Aphanomyces sp. APH2 strain APH2_BRN01 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 22159 381 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces sp. APH2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;