RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA763243" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA763243 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12223019 12223019 PRJNA763243_P_NODE_43170_length_269_cov_2.193878_g42824_i0 PRJNA763243 43170 269 2.193878 5.90153182 Plectus minimus 446301 Nematoda Nematoda 457 4.4699999999999985e-124   NTclustered gi|148614851|gb|EF417148.1| 446301 g42824 i0 97.736 97.8252788104089 265 6 99 0 3 267 280 16 Plectus minimus large subunit ribosomal RNA gene, partial sequence blastn 26315 457 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Plectidae Plectus Plectus minimus
24970759 24970759 PRJNA763243_P_NODE_9060_length_493_cov_8.440476_g8718_i0 PRJNA763243 9060 493 8.440476 41.61154668 Caenorhabditis remanei 31234 Nematoda Nematoda 385 4.18e-102   NTclustered gi|2445353178|ref|XM_003097296.2| 31234 g8718 i0 85.912 75.6754563894523 362 49 73 2 121 481 1307 947 Caenorhabditis remanei uncharacterized protein (GCK72_003433), partial mRNA blastn 37308 385 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;