RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA763243" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA763243 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18595022 18595022 PRJNA763243_P_NODE_43915_length_267_cov_3.515464_g43569_i0 PRJNA763243 43915 267 3.515464 9.38628888 Orpinomyces sp. OUS1 301046 Fungi Fungi 78.7 4.03e-10   NTclustered gi|55859492|emb|AJ864475.1| 301046 g43569 i0 78.195 36.2696629213483 133 21 48 7 18 145 4587 4716 Orpinomyces sp. OUS1 partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA, clone V5-1 blastn 9684 78.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Orpinomyces Orpinomyces sp. OUS1
18595077 18595077 PRJNA763243_P_NODE_4615_length_650_cov_382.792028_g4301_i0 PRJNA763243 4615 650 382.792028 2488.148182 Hyaloraphidium curvatum 82268 Fungi Fungi 292 3.5e-74   NTclustered gi|311235629|ref|NG_027646.1| 82268 g4301 i0 75.498 74.1184615384615 653 130 99 23 2 647 1902 1273 Hyaloraphidium curvatum SAG 235-1 28S rRNA gene, partial sequence; from reference material blastn 48177 292 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales   Hyaloraphidium Hyaloraphidium curvatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;