RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA763243" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA763243 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2020163 2020163 PRJNA763243_P_NODE_8022_length_518_cov_2.644944_g7681_i0 PRJNA763243 8022 518 2.644944 13.70080992 Plasmodium berghei 5821 SAR_Eukaryotes SAR_Eukaryotes 387 1.22e-102   NTclustered gi|1843568304|ref|XM_034563737.1| 5823 g7681 i0 85.052 98.6602316602317 388 49 75 6 132 518 1 380 Plasmodium berghei ANKA polyubiquitin, putative (PBANKA_0610300), partial mRNA blastn 51106 387 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei
3294782 3294782 PRJNA763243_P_NODE_49303_length_256_cov_1.071038_g48957_i0 PRJNA763243 49303 256 1.071038 2.74185728 Cryptosporidium bovis 310047 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|2787666010|ref|XM_067327603.1| 310047 g48957 i0 92.308 0.265625 39 3 15 0 146 184 823 861 Cryptosporidium bovis uncharacterized protein (FG379_002000), partial mRNA blastn 68 56.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium bovis
5847482 5847482 PRJNA763243_P_NODE_6705_length_557_cov_9.803719_g6369_i0 PRJNA763243 6705 557 9.803719 54.60671483 Cystoisospora felis 482539 SAR_Eukaryotes SAR_Eukaryotes 167 1.88e-36   NTclustered gi|3323386|gb|U85705.1|IFU85705 482539 g6369 i0 92.982 20.4631956912029 114 8 20 0 41 154 2037 1924 Isospora felis 28S large subunit ribosomal RNA gene, complete sequence blastn 11398 167 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Cystoisospora Cystoisospora felis
9672297 9672297 PRJNA763243_P_NODE_64728_length_239_cov_2.126506_g64382_i0 PRJNA763243 64728 239 2.126506 5.08234934 Plasmodium sp. gorilla clade G2 880535 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.021   NTclustered gi|1620172169|ref|XM_028682118.1| 880535 g64382 i0 92.308 0.163179916317992 39 0 16 2 7 44 9249 9213 Plasmodium sp. gorilla clade G2 conserved Plasmodium protein, unknown function (PADL01_1006600), partial mRNA blastn 39 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium sp. gorilla clade G2
12684889 12684889 PRJNA763243_P_NODE_35730_length_288_cov_4.451163_g35384_i0 PRJNA763243 35730 288 4.451163 12.81934944 Cryptosporidium 5806 SAR_Eukaryotes SAR_Eukaryotes 67.6 9.51e-7   NTclustered gi|527046689|tpe|HG323591.1| 5807 g35384 i0 93.333 0.3125 45 3 16 0 176 220 156 200 TPA: Cryptosporidium parvum SRP RNA for signal recognition particle RNA blastn 90 67.6 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum
13497086 13497086 PRJNA763243_P_NODE_43011_length_269_cov_19.755102_g42665_i0 PRJNA763243 43011 269 19.755102 53.14122438 Toxoplasma gondii 5811 SAR_Eukaryotes SAR_Eukaryotes 58.4 5.3e-4   NTclustered gi|820698945|tpe|LN714498.1| 432359 g42665 i0 85.714 1.51301115241636 56 6 20 2 54 108 2293519 2293465 TPA_asm: Toxoplasma gondii VEG, chromosome chrVIII, complete genome blastn 407 58.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
17320933 17320933 PRJNA763243_P_NODE_11334_length_449_cov_3.050532_g10991_i0 PRJNA763243 11334 449 3.050532 13.69688868 Babesia microti 5868 SAR_Eukaryotes SAR_Eukaryotes 104 1.18e-17   NTclustered gi|1206245954|ref|XR_002459985.1| 1133968 g10991 i0 83.784 17.6503340757238 111 16 24 2 192 301 3504 3613 Babesia microti strain RI 28S ribosomal RNA rRNA blastn 7925 104 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia microti
21607402 21607402 PRJNA763243_P_NODE_39337_length_278_cov_10.526829_g38991_i0 PRJNA763243 39337 278 10.526829 29.26458462 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 58.4 5.5e-4   NTclustered gi|527046684|tpe|HG323586.1| 5833 g38991 i0 100 1.40647482014388 31 0 11 0 181 211 159 189 TPA: Plasmodium falciparum SRP RNA for signal recognition particle RNA blastn 391 58.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;