RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA763243" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA763243 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
743530 743530 PRJNA763243_P_NODE_50401_length_253_cov_6.438889_g50055_i0 PRJNA763243 50401 253 6.438889 16.29038917 Sphaerastrum fockii 299901 Root_unresolved Root_unresolved 189 1.6799999999999996e-43   NTclustered gi|61187370|gb|AY752991.1| 299901 g50055 i0 94.355 51.0948616600791 124 6 49 1 120 243 2099 1977 Sphaerastrum fockii 28S ribosomal RNA gene, partial sequence blastn 12927 189 1 Eukaryota Haptista     Centroplasthelida Pterocystida Heterophryidae Sphaerastrum Sphaerastrum fockii
12222730 12222730 PRJNA763243_P_NODE_31210_length_304_cov_5.484848_g30864_i0 PRJNA763243 31210 304 5.484848 16.67393792 Meringosphaera mediterranea 2837474 Root_unresolved Root_unresolved 102 2.77e-17   NTclustered gi|2526806211|gb|OR195157.1| 2837474 g30864 i0 83.051 24.9473684210526 118 15 38 5 185 301 2939 2826 Meringosphaera mediterranea isolate S7 internal transcribed spacer 2 and large subunit ribosomal RNA gene, partial sequence blastn 7584 102 1 Eukaryota Haptista     Centroplasthelida     Meringosphaera Meringosphaera mediterranea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;