RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA760976" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA760976 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
742369 742369 PRJNA760976_P_NODE_3641_length_683_cov_3.018033_g3338_i0 PRJNA760976 3641 683 3.018033 20.61316539 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 230 2.929999999999999e-55   NTclustered gi|300078497|gb|GU001159.1| 200886 g3338 i0 75.61 26.8257686676428 533 93 74 24 4 509 2503 3025 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18322 230 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
7121048 7121048 PRJNA760976_P_NODE_12946_length_407_cov_1.326347_g12626_i0 PRJNA760976 12946 407 1.326347 5.39823229 Amoeba proteus 5775 Tubulinea other_Eukaryota 592 1.86e-164   NTclustered gi|844573744|gb|KP411223.1| 5775 g12626 i0 93.317 0.992628992628993 404 22 98 3 5 404 21 423 Amoeba proteus Tom40 mRNA, complete cds blastn 404 592 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
19869193 19869193 PRJNA760976_P_NODE_11336_length_429_cov_1.668539_g11016_i0 PRJNA760976 11336 429 1.668539 7.15803231 Pyxidicula operculata 1078852 Tubulinea other_Eukaryota 438 2.7199999999999993e-118   NTclustered gi|345452598|gb|JF694317.1| 1078852 g11016 i0 95.941 83.7878787878788 271 10 63 1 1 271 371 640 Pyxidicula operculata clone 2 actin gene, partial cds blastn 35945 438 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida   Pyxidicula Pyxidicula operculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;