RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA760976" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA760976 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
742319 742319 PRJNA760976_P_NODE_20301_length_347_cov_1.572993_g19980_i0 PRJNA760976 20301 347 1.572993 5.45828571 Pirellula sp. SH-Sr6A 1632865 Bacteria Bacteria 542 1.5999999999999996e-149   NTclustered gi|1015448679|gb|CP011272.1| 1632865 g19980 i0 95.072 229.449567723343 345 15 99 2 3 347 3095881 3096223 Pirellula sp. SH-Sr6A, complete genome blastn 79619 542 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Pirellula Pirellula sp. SH-Sr6A
9670843 9670843 PRJNA760976_P_NODE_52408_length_244_cov_3.111111_g52087_i0 PRJNA760976 52408 244 3.111111 7.59111084 Pirellula sp. SH-Sr6A 1632865 Bacteria Bacteria 363 8.949999999999999e-96   NTclustered gi|1015448679|gb|CP011272.1| 1632865 g52087 i0 93.443 94.8483606557377 244 16 100 0 1 244 3097522 3097765 Pirellula sp. SH-Sr6A, complete genome blastn 23143 363 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Pirellula Pirellula sp. SH-Sr6A
22882707 22882707 PRJNA760976_P_NODE_11638_length_424_cov_2.179487_g11318_i0 PRJNA760976 11638 424 2.179487 9.24102488 Planctomycetia 203683 Bacteria Bacteria 640 6.85e-179   NTclustered gi|12583969|gb|AF245373.1|AF245373 79870 g11318 i0 94.313 120.905660377358 422 17 99 3 1 422 1444 1030 Planctomycete str. 449 23S ribosomal RNA gene, partial sequence blastn 51264 640 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   planctomycete str. 449

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;