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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA760976" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA760976 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
742315 742315 PRJNA760976_P_NODE_18581_length_357_cov_2.616197_g18260_i0 PRJNA760976 18581 357 2.616197 9.33982329 Pythium torulosum 4799 SAR_Eukaryotes SAR_Eukaryotes 399 1.0499999999999998e-106   NTclustered gi|1780534029|gb|MK753000.1| 4799 g18260 i0 88.889 85.7254901960784 324 36 91 0 34 357 1 324 Pythium torulosum isolate MISO_8-29.1 beta-tubulin mRNA, complete cds blastn 30604 399 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium torulosum
3293626 3293626 PRJNA760976_P_NODE_27583_length_312_cov_0.891213_g27262_i0 PRJNA760976 27583 312 0.891213 2.78058456 Phytophthora lateralis 129355 SAR_Eukaryotes SAR_Eukaryotes 135 2.82e-27   NTclustered gi|2235892989|tpg|BK012092.1| 129355 g27262 i0 89.623 0.67948717948718 106 11 34 0 47 152 17942 17837 TPA_asm: Phytophthora lateralis strain SMST21 mitochondrion, complete genome blastn 212 135 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora lateralis
3756738 3756738 PRJNA760976_P_NODE_12423_length_413_cov_4.111765_g12103_i0 PRJNA760976 12423 413 4.111765 16.98158945 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 235 3.67e-57   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g12103 i0 84.979 75.5326876513317 233 34 56 1 18 249 67 299 Aphanomyces astaci polyubiquitin mRNA blastn 31195 235 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
9670731 9670731 PRJNA760976_P_NODE_11908_length_421_cov_1.290230_g11588_i0 PRJNA760976 11908 421 1.29023 5.4318683 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 697 0   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g11588 i0 96.454 105.064133016627 423 13 100 2 1 421 2237 2659 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 44232 697 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
13496062 13496062 PRJNA760976_P_NODE_11411_length_428_cov_1.171831_g11091_i0 PRJNA760976 11411 428 1.171831 5.01543668 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 191 8.38e-44   NTclustered gi|2794892223|ref|XM_067887285.1| 164328 g11091 i0 80.645 58.231308411215 248 46 58 2 21 267 447 201 Phytophthora ramorum 60S ribosomal protein L23a (KRP23_2536), partial mRNA blastn 24923 191 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
13496173 13496173 PRJNA760976_P_NODE_48551_length_250_cov_0.870056_g48230_i0 PRJNA760976 48551 250 0.870056 2.17514 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 167 7.75e-37   NTclustered gi|2795050181|ref|XM_067944756.1| 4785 g48230 i0 89.394 53.256 132 14 53 0 1 132 135 266 Phytophthora cinnamomi dynein light chain LC6, flagellar outer arm (IUM83_19694), partial mRNA blastn 13314 167 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
17782626 17782626 PRJNA760976_P_NODE_11794_length_422_cov_2.100287_g11474_i0 PRJNA760976 11794 422 2.100287 8.86321114 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 431 4.47e-116   NTclustered gi|698785784|ref|XM_009827634.1| 112090 g11474 i0 86.945 91.9549763033175 383 50 91 0 2 384 383 1 Aphanomyces astaci histone H3 partial mRNA blastn 38805 431 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
19869244 19869244 PRJNA760976_P_NODE_28176_length_309_cov_1.610169_g27855_i0 PRJNA760976 28176 309 1.610169 4.97542221 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 248 3.43e-61   NTclustered gi|301105318|ref|XM_002901697.1| 403677 g27855 i0 84.646 35.5631067961165 254 33 81 5 32 282 86 336 Phytophthora infestans T30-4 elongation factor 2 (PITG_10941), mRNA blastn 10989 248 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;