RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA760976" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA760976 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14771323 14771323 PRJNA760976_P_NODE_50372_length_247_cov_0.885057_g50051_i0 PRJNA760976 50372 247 0.885057 2.18609079 Micoletzkya palliati 1250334 Nematoda Nematoda 165 2.75e-36   NTclustered gi|410992319|gb|JX163988.1| 1250334 g50051 i0 84.118 4.4412955465587 170 27 69 0 32 201 170 1 Micoletzkya palliati large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 1097 165 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Micoletzkya Micoletzkya palliati
23695248 23695248 PRJNA760976_P_NODE_12339_length_415_cov_1.081871_g12019_i0 PRJNA760976 12339 415 1.081871 4.48976465 Caenorhabditis briggsae 6238 Nematoda Nematoda 254 1.02e-62   NTclustered gi|268580870|ref|XM_002645372.1| 6238 g12019 i0 82.807 17.7084337349398 285 48 68 1 75 358 938 654 Caenorhabditis briggsae Protein CBR-SAMS-1 (Cbr-sams-1), partial mRNA blastn 7349 254 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;