RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA760976" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA760976 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3293601 3293601 PRJNA760976_P_NODE_18283_length_359_cov_2.653846_g17962_i0 PRJNA760976 18283 359 2.653846 9.52730714 Polychytrium aggregatum 110093 Fungi Fungi 209 1.91e-49   NTclustered gi|2432132411|ref|XM_053109501.1| 110093 g17962 i0 82.449 60.5877437325905 245 37 67 4 104 345 1188 947 Polychytrium aggregatum ribosomal protein L3-domain-containing protein (BJ171DRAFT_489537), mRNA blastn 21751 209 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
3293674 3293674 PRJNA760976_P_NODE_46463_length_254_cov_2.099448_g46142_i0 PRJNA760976 46463 254 2.099448 5.33259792 Batrachochytrium dendrobatidis 109871 Fungi Fungi 189 1.6799999999999996e-43   NTclustered gi|575473075|ref|XM_006675768.1| 684364 g46142 i0 82.791 25.511811023622 215 33 83 3 20 231 234 21 Batrachochytrium dendrobatidis JAM81 ADP-Ribosylation factor (BATDEDRAFT_36333), mRNA blastn 6480 189 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis
10946415 10946415 PRJNA760976_P_NODE_12809_length_408_cov_3.453731_g12489_i0 PRJNA760976 12809 408 3.453731 14.09122248 Synchytrium microbalum 1806994 Fungi Fungi 261 5.98e-65   NTclustered gi|1759161687|ref|XM_031171014.1| 1806994 g12489 i0 81.994 24.9705882352941 311 52 76 4 70 378 312 4 Synchytrium microbalum uncharacterized protein (SmJEL517_g05086), partial mRNA blastn 10188 261 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
12221961 12221961 PRJNA760976_P_NODE_17890_length_362_cov_1.726644_g17569_i0 PRJNA760976 17890 362 1.726644 6.25045128 Polychytrium aggregatum 110093 Fungi Fungi 145 5.51e-30   NTclustered gi|2432158676|ref|XM_053113190.1| 110093 g17569 i0 76.866 57.0939226519337 268 54 73 6 5 268 13 276 Polychytrium aggregatum ribosomal protein S25 component of cytosolic 80S ribosome and 40S small subunit (BJ171DRAFT_559057), partial mRNA blastn 20668 145 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;