RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

32 rows where analysis = "blastn", bioproject = "PRJNA760976" and tax_phylum = "Chlorophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 32 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA760976 · 32 ✖

analysis 1

  • blastn · 32 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
742376 742376 PRJNA760976_P_NODE_37761_length_278_cov_1.097561_g37440_i0 PRJNA760976 37761 278 1.097561 3.05121958 Gonium pectorale 33097 Plants Plants 104 6.97e-18   NTclustered gi|459172117|ref|NC_020437.1| 33097 g37440 i0 90.909 5.37410071942446 77 7 28 0 174 250 9720 9644 Gonium pectorale mitochondrion, complete genome blastn 1494 104 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Gonium Gonium pectorale
742418 742418 PRJNA760976_P_NODE_49741_length_248_cov_0.880000_g49420_i0 PRJNA760976 49741 248 0.88 2.1824 Neochloris aquatica 3099 Plants Plants 335 1.9899999999999996e-87   NTclustered gi|1008861455|ref|NC_029670.1| 3099 g49420 i0 91.165 53.633064516129 249 18 99 4 2 248 10064 10310 Neochloris aquatica strain UTEX 138 chloroplast, complete genome blastn 13301 335 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Neochloridaceae Neochloris Neochloris aquatica
3293593 3293593 PRJNA760976_P_NODE_16403_length_374_cov_1.342193_g16082_i0 PRJNA760976 16403 374 1.342193 5.01980182 Monoraphidium neglectum 145388 Plants Plants 374 6.689999999999998e-99   NTclustered gi|926776617|ref|XM_014041329.1| 145388 g16082 i0 86.55 4.47326203208556 342 42 91 3 1 340 340 1 Monoraphidium neglectum 60S ribosomal protein L11 partial mRNA blastn 1673 374 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
3293629 3293629 PRJNA760976_P_NODE_30043_length_302_cov_1.493450_g29722_i0 PRJNA760976 30043 302 1.49345 4.510219 Monoraphidium neglectum 145388 Plants Plants 315 3.25e-81   NTclustered gi|926786573|ref|XM_014046307.1| 145388 g29722 i0 85.479 1.00331125827815 303 42 100 2 1 302 443 142 Monoraphidium neglectum 60S ribosomal protein L24-2 mRNA blastn 303 315 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
3293732 3293732 PRJNA760976_P_NODE_7023_length_514_cov_2.648526_g6705_i0 PRJNA760976 7023 514 2.648526 13.61342364 Ettlia sp. YC001 1191503 Plants Plants 446 1.9799999999999998e-120   NTclustered gi|1815409459|gb|MN184716.1| 1191503 g6705 i0 88.095 65.3112840466926 378 41 73 3 10 385 447 72 Ettlia sp. YC001 ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 2 (rbcS2) mRNA, complete cds; chloroplast blastn 33570 446 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales   Ettlia Ettlia sp. YC001
3293736 3293736 PRJNA760976_P_NODE_7583_length_500_cov_1.070258_g7264_i0 PRJNA760976 7583 500 1.070258 5.35129 Monoraphidium neglectum 145388 Plants Plants 416 1.4999999999999999e-111   NTclustered gi|926774059|ref|XM_014040050.1| 145388 g7264 i0 85.751 71.108 393 56 79 0 69 461 393 1 Monoraphidium neglectum 40S ribosomal protein S15a-1 mRNA blastn 35554 416 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
4570658 4570658 PRJNA760976_P_NODE_10484_length_441_cov_1.804348_g10165_i0 PRJNA760976 10484 441 1.804348 7.95717468 Monoraphidium neglectum 145388 Plants Plants 268 3.889999999999999e-67   NTclustered gi|926780891|ref|XM_014043466.1| 145388 g10165 i0 85.171 0.936507936507937 263 37 59 2 149 410 270 9 Monoraphidium neglectum 60S ribosomal protein L31 mRNA blastn 413 268 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
4570669 4570669 PRJNA760976_P_NODE_14184_length_393_cov_2.490625_g13864_i0 PRJNA760976 14184 393 2.490625 9.78815625 Monoraphidium neglectum 145388 Plants Plants 438 2.4699999999999993e-118   NTclustered gi|926796681|ref|XM_014050626.1| 145388 g13864 i0 90.881 37.7557251908397 329 27 83 2 5 330 329 1 Monoraphidium neglectum 60S ribosomal protein L30 mRNA blastn 14838 438 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
4570702 4570702 PRJNA760976_P_NODE_23664_length_328_cov_3.929412_g23343_i0 PRJNA760976 23664 328 3.929412 12.88847136 Chlorella variabilis 554065 Plants Plants 246 1.32e-60   NTclustered gi|552812537|ref|XM_005843664.1| 554065 g23343 i0 81.667 1.88414634146341 300 51 91 4 1 298 331 34 Chlorella variabilis hypothetical protein (CHLNCDRAFT_37334) mRNA, complete cds blastn 618 246 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
4570741 4570741 PRJNA760976_P_NODE_38604_length_275_cov_1.876238_g38283_i0 PRJNA760976 38604 275 1.876238 5.1596545 Chlamydomonas reinhardtii 3055 Plants Plants 244 3.88e-60   NTclustered gi|2082258184|ref|XM_001701325.2| 3055 g38283 i0 86.087 4.91272727272727 230 28 83 3 3 230 485 712 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_11g467569v5), mRNA blastn 1351 244 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
4570742 4570742 PRJNA760976_P_NODE_39144_length_274_cov_1.134328_g38823_i0 PRJNA760976 39144 274 1.134328 3.10805872 Auxenochlorella protothecoides 3075 Plants Plants 228 3.899999999999999e-55   NTclustered gi|760450258|ref|XM_011403896.1| 3075 g38823 i0 84.889 2.14963503649635 225 34 82 0 46 270 609 385 Auxenochlorella protothecoides 40S ribosomal protein S4-3 partial mRNA blastn 589 228 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
5845859 5845859 PRJNA760976_P_NODE_10545_length_440_cov_1.746594_g10226_i0 PRJNA760976 10545 440 1.746594 7.6850135999999996 Botryosphaerella sudetica 244529 Plants Plants 778 0   NTclustered gi|523583556|gb|KC145453.1| 244529 g10226 i0 98.182 100.225 440 8 100 0 1 440 2169 1730 Botryosphaerella sudetica strain UTEX 2629 28S ribosomal RNA gene, partial sequence blastn 44099 778 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Neochloridaceae Botryosphaerella Botryosphaerella sudetica
5845892 5845892 PRJNA760976_P_NODE_19765_length_350_cov_1.689531_g19444_i0 PRJNA760976 19765 350 1.689531 5.9133585 Micromonas commoda 296587 Plants Plants 141 6.86e-29   NTclustered gi|255081011|ref|XM_002504026.1| 296587 g19444 i0 86.614 2.86285714285714 127 17 36 0 224 350 536 410 Micromonas commoda plastocyanin, chloroplast precursor (PETE), mRNA blastn 1002 141 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
6309047 6309047 PRJNA760976_P_NODE_16565_length_373_cov_0.920000_g16244_i0 PRJNA760976 16565 373 0.92 3.4316 Eukaryota 2759 Plants Plants 237 9.13e-58   NTclustered gi|926781221|ref|XM_014043631.1| 145388 g16244 i0 90.11 168.710455764075 182 18 49 0 186 367 227 46 Monoraphidium neglectum large subunit ribosomal protein L40e mRNA blastn 62929 237 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
7121040 7121040 PRJNA760976_P_NODE_11426_length_427_cov_2.652542_g11106_i0 PRJNA760976 11426 427 2.652542 11.32635434 Chlamydomonas reinhardtii 3055 Plants Plants 313 1.71e-80   NTclustered gi|1181547|gb|L27668.1|CRECPGAPA 3055 g11106 i0 84.211 16.9648711943794 323 49 75 2 106 427 573 894 Chlamydomonas reinhardtii chloroplast glyceraldehyde-3-phosphate dehydrogenase (gapA) gene, complete cds blastn 7244 313 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
9670734 9670734 PRJNA760976_P_NODE_12608_length_411_cov_1.733728_g12288_i0 PRJNA760976 12608 411 1.733728 7.12562208 Monoraphidium neglectum 145388 Plants Plants 455 2.5800000000000003e-123   NTclustered gi|926766679|ref|XM_014036938.1| 145388 g12288 i0 87.692 89.4963503649635 390 48 95 0 22 411 528 139 Monoraphidium neglectum NADP-dependent glyceraldehydephosphatedehydrogenase subunit A mRNA blastn 36783 455 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
10946542 10946542 PRJNA760976_P_NODE_9129_length_466_cov_1.033079_g8810_i0 PRJNA760976 9129 466 1.033079 4.81414814 Chlamydomonas reinhardtii 3055 Plants Plants 462 1.77e-125   NTclustered gi|2082238324|ref|XM_001701829.2| 3055 g8810 i0 85.088 12.4442060085837 456 64 97 4 1 454 1603 1150 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_02g080200v5), mRNA blastn 5799 462 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
12221975 12221975 PRJNA760976_P_NODE_22530_length_334_cov_4.758621_g22209_i0 PRJNA760976 22530 334 4.758621 15.89379414 Neochloris aquatica 3099 Plants Plants 425 1.61e-114   NTclustered gi|1008861455|ref|NC_029670.1| 3099 g22209 i0 93.403 127.895209580838 288 18 86 1 1 287 79872 79585 Neochloris aquatica strain UTEX 138 chloroplast, complete genome blastn 42717 425 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Neochloridaceae Neochloris Neochloris aquatica
12222028 12222028 PRJNA760976_P_NODE_40970_length_269_cov_1.168367_g40649_i0 PRJNA760976 40970 269 1.168367 3.14290723 Scherffelia dubia 3190 Plants Plants 75 5.26e-9   NTclustered gi|1783497212|ref|NC_045363.1| 3190 g40649 i0 77.536 20.364312267658 138 21 51 9 110 239 31373 31508 Scherffelia dubia culture SAG:17.86 mitochondrion, complete genome blastn 5478 75 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Scherffelia Scherffelia dubia
12222081 12222081 PRJNA760976_P_NODE_6730_length_523_cov_1.942222_g6412_i0 PRJNA760976 6730 523 1.942222 10.15782106 Monoraphidium neglectum 145388 Plants Plants 688 0   NTclustered gi|926786575|ref|XM_014046308.1| 145388 g6412 i0 93.86 68.395793499044 456 28 87 0 65 520 1 456 Monoraphidium neglectum elongation factor EF-1 alpha subunit mRNA blastn 35771 688 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
13496152 13496152 PRJNA760976_P_NODE_42191_length_265_cov_2.281250_g41870_i0 PRJNA760976 42191 265 2.28125 6.0453125 Volvox carteri 3067 Plants Plants 165 2.98e-36   NTclustered gi|302852142|ref|XM_002957547.1| 3068 g41870 i0 84.756 62.2981132075472 164 25 62 0 102 265 300 463 Volvox carteri f. nagariensis isocitrate dehydrogenase, NADP-dependent, mitochondrial (idh3), mRNA blastn 16509 165 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
13496169 13496169 PRJNA760976_P_NODE_46911_length_253_cov_1.700000_g46590_i0 PRJNA760976 46911 253 1.7 4.301 Tetradesmus obliquus 3088 Plants Plants 69.4 2.28e-7   NTclustered gi|87313208|gb|DQ370089.1| 3088 g46590 i0 97.5 0.604743083003953 40 1 16 0 1 40 729 768 Scenedesmus obliquus light-harvesting chlorophyll-a/b binding protein LhcbM4 mRNA, complete cds blastn 153 69.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
14771229 14771229 PRJNA760976_P_NODE_17592_length_364_cov_2.158076_g17271_i0 PRJNA760976 17592 364 2.158076 7.85539664 Chlamydomonas reinhardtii 3055 Plants Plants 244 5.31e-60   NTclustered gi|2082249449|ref|XM_001691166.2| 3055 g17271 i0 79.235 23.0357142857143 366 65 99 10 3 362 402 42 Chlamydomonas reinhardtii ribosomal protein S4 (CHLRE_06g308250v5), mRNA blastn 8385 244 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
14771255 14771255 PRJNA760976_P_NODE_27892_length_310_cov_1.890295_g27571_i0 PRJNA760976 27892 310 1.890295 5.8599145 Monoraphidium neglectum 145388 Plants Plants 278 4.39e-70   NTclustered gi|926775153|ref|XM_014040597.1| 145388 g27571 i0 88.889 11.1903225806452 225 25 73 0 57 281 225 1 Monoraphidium neglectum small subunit ribosomal protein S3Ae mRNA blastn 3469 278 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
14771280 14771280 PRJNA760976_P_NODE_35052_length_285_cov_3.245283_g34731_i0 PRJNA760976 35052 285 3.245283 9.24905655 Chlorella variabilis 554065 Plants Plants 370 6.4e-98   NTclustered gi|552810071|ref|XM_005843042.1| 554065 g34731 i0 90.426 77.2982456140351 282 25 99 2 1 281 641 361 Chlorella variabilis hypothetical protein (CHLNCDRAFT_49269) mRNA, complete cds blastn 22030 370 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
16044952 16044952 PRJNA760976_P_NODE_10033_length_449_cov_1.287234_g9714_i0 PRJNA760976 10033 449 1.287234 5.77968066 Chlamydomonas reinhardtii 3055 Plants Plants 518 3.57e-142   NTclustered gi|238534977|gb|GQ176397.1| 3055 g9714 i0 90.428 79.9910913140312 397 32 88 4 21 414 594 201 Chlamydomonas reinhardtii clone CNC66 molecular marker mRNA sequence blastn 35916 518 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
18594063 18594063 PRJNA760976_P_NODE_45675_length_256_cov_3.896175_g45354_i0 PRJNA760976 45675 256 3.896175 9.974208 Monoraphidium neglectum 145388 Plants Plants 270 5.899999999999999e-68   NTclustered gi|926783375|ref|XM_014044708.1| 145388 g45354 i0 87.554 14.52734375 233 29 91 0 1 233 233 1 Monoraphidium neglectum 40S ribosomal protein S27-2 mRNA blastn 3719 270 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
22419641 22419641 PRJNA760976_P_NODE_23678_length_328_cov_2.635294_g23357_i0 PRJNA760976 23678 328 2.635294 8.64376432 Monoraphidium neglectum 145388 Plants Plants 226 1.7199999999999998e-54   NTclustered gi|926774875|ref|XM_014040458.1| 145388 g23357 i0 93.96 6.5609756097561 149 9 45 0 1 149 234 382 Monoraphidium neglectum Ferredoxin mRNA blastn 2152 226 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
22882737 22882737 PRJNA760976_P_NODE_52038_length_245_cov_0.883721_g51717_i0 PRJNA760976 52038 245 0.883721 2.16511645 Chlorophyta 3041 Plants Plants 438 1.45e-118   NTclustered gi|1021149709|gb|KU678200.1| 38881 g51717 i0 99.583 99.5755102040816 240 1 98 0 6 245 425 186 Botryococcus braunii strain KMRR 18S ribosomal RNA gene, partial sequence blastn 24396 438 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Botryococcus Botryococcus braunii
23695250 23695250 PRJNA760976_P_NODE_13199_length_403_cov_14.172727_g12879_i0 PRJNA760976 13199 403 14.172727 57.11608981 Picocystis salinarum 88271 Plants Plants 67.6 1.38e-6   NTclustered gi|371782106|emb|HE610138.1| 88271 g12879 i0 81.928 86.6401985111662 83 12 20 3 322 403 3692 3612 Picocystis salinarum 5.8S rRNA gene, 28S rRNA gene (partial) and ITS2, strain CCMP1897 blastn 34916 67.6 1 Eukaryota   Viridiplantae Chlorophyta Picocystophyceae Picocystales Picocystaceae Picocystis Picocystis salinarum
23695318 23695318 PRJNA760976_P_NODE_41159_length_268_cov_1.548718_g40838_i0 PRJNA760976 41159 268 1.548718 4.15056424 Chlamydomonas reinhardtii 3055 Plants Plants 226 1.37e-54   NTclustered gi|2082243743|ref|XM_001693294.2| 3055 g40838 i0 83.966 0.884328358208955 237 36 88 2 11 246 280 45 Chlamydomonas reinhardtii ribosomal protein S21 (CHLRE_03g203450v5), mRNA blastn 237 226 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
24968938 24968938 PRJNA760976_P_NODE_21000_length_343_cov_1.392593_g20679_i0 PRJNA760976 21000 343 1.392593 4.77659399 Monoraphidium neglectum 145388 Plants Plants 237 8.34e-58   NTclustered gi|926767437|ref|XM_014037317.1| 145388 g20679 i0 82.5 43.8892128279883 280 39 80 6 26 300 1 275 Monoraphidium neglectum 60S ribosomal protein L23A mRNA blastn 15054 237 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;