RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA760976" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 6 ✖

bioproject 1

  • PRJNA760976 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
742319 742319 PRJNA760976_P_NODE_20301_length_347_cov_1.572993_g19980_i0 PRJNA760976 20301 347 1.572993 5.45828571 Pirellula sp. SH-Sr6A 1632865 Bacteria Bacteria 542 1.5999999999999996e-149   NTclustered gi|1015448679|gb|CP011272.1| 1632865 g19980 i0 95.072 229.449567723343 345 15 99 2 3 347 3095881 3096223 Pirellula sp. SH-Sr6A, complete genome blastn 79619 542 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Pirellula Pirellula sp. SH-Sr6A
742378 742378 PRJNA760976_P_NODE_381_length_1806_cov_4.244662_g300_i0 PRJNA760976 381 1806 4.244662 76.65859572 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 2351 0   NTclustered gi|2874253811|emb|OY969795.1| 464461 g300 i0 90.252 117.550387596899 1826 141 99 30 3 1806 655386 653576 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 212296 2351 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
5845986 5845986 PRJNA760976_P_NODE_52085_length_245_cov_0.877907_g51764_i0 PRJNA760976 52085 245 0.877907 2.15087215 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 453 5.1900000000000006e-123   NTclustered gi|2874254019|emb|OY970344.1| 412056 g51764 i0 100 202.167346938776 245 0 100 0 1 245 736722 736478 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.c.3 genome assembly, chromosome: 1 blastn 49531 453 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
9670843 9670843 PRJNA760976_P_NODE_52408_length_244_cov_3.111111_g52087_i0 PRJNA760976 52408 244 3.111111 7.59111084 Pirellula sp. SH-Sr6A 1632865 Bacteria Bacteria 363 8.949999999999999e-96   NTclustered gi|1015448679|gb|CP011272.1| 1632865 g52087 i0 93.443 94.8483606557377 244 16 100 0 1 244 3097522 3097765 Pirellula sp. SH-Sr6A, complete genome blastn 23143 363 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Pirellula Pirellula sp. SH-Sr6A
13496071 13496071 PRJNA760976_P_NODE_13571_length_399_cov_2.168712_g13251_i0 PRJNA760976 13571 399 2.168712 8.65316088 Candidatus Organicella extenuata 2841811 Bacteria Bacteria 78.7 6.31e-10   NTclustered gi|2569232906|gb|CP128385.1| 2841811 g13251 i0 82.222 13.4411027568922 90 16 23 0 309 398 111648 111737 MAG: Candidatus Organicella extenuata isolate MAG_Ga0307966_1000010 chromosome, complete genome blastn 5363 78.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota       Candidatus Organicella Candidatus Organicella extenuata
22882707 22882707 PRJNA760976_P_NODE_11638_length_424_cov_2.179487_g11318_i0 PRJNA760976 11638 424 2.179487 9.24102488 Planctomycetia 203683 Bacteria Bacteria 640 6.85e-179   NTclustered gi|12583969|gb|AF245373.1|AF245373 79870 g11318 i0 94.313 120.905660377358 422 17 99 3 1 422 1444 1030 Planctomycete str. 449 23S ribosomal RNA gene, partial sequence blastn 51264 640 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   planctomycete str. 449

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;