RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA760904" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA760904 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
742226 742226 PRJNA760904_P_NODE_16421_length_248_cov_0.880000_g16364_i0 PRJNA760904 16421 248 0.88 2.1824 Caenorhabditis elegans 6239 Nematoda Nematoda 459 1.13e-124   NTclustered gi|1972287125|ref|NM_071607.7| 6239 g16364 i0 100 9.79435483870968 248 0 100 0 1 248 276 29 Caenorhabditis elegans Large ribosomal subunit protein uL5A (rpl-11.1), mRNA blastn 2429 459 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
742289 742289 PRJNA760904_P_NODE_9461_length_292_cov_1.890411_g9404_i0 PRJNA760904 9461 292 1.890411 5.52000012 Loa loa 7209 Nematoda Nematoda 126 1.57e-24   NTclustered gi|1158594513|ref|XM_003141827.2| 7209 g9404 i0 87.273 3.42123287671233 110 14 38 0 23 132 245 354 Loa loa ADP-ribosylation factor 1 mRNA blastn 999 126 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
5845820 5845820 PRJNA760904_P_NODE_19985_length_242_cov_0.911243_g19928_i0 PRJNA760904 19985 242 0.911243 2.20520806 Caenorhabditis elegans 6239 Nematoda Nematoda 448 2.3799999999999995e-121   NTclustered gi|5541647|dbj|D45896.1| 6239 g19928 i0 100 9.97933884297521 242 0 100 0 1 242 558 317 Caenorhabditis elegans DNA for troponin C, complete cds blastn 2415 448 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
14771150 14771150 PRJNA760904_P_NODE_19252_length_243_cov_0.905882_g19195_i0 PRJNA760904 19252 243 0.905882 2.20129326 Caenorhabditis elegans 6239 Nematoda Nematoda 442 1.1099999999999995e-119   NTclustered gi|1604722011|gb|CP038193.1| 6239 g19195 i0 99.588 97.3621399176955 243 0 100 1 1 243 4811 5052 Caenorhabditis elegans strain CB4856 mitochondrion, complete genome blastn 23659 442 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
16044912 16044912 PRJNA760904_P_NODE_20873_length_241_cov_0.916667_g20816_i0 PRJNA760904 20873 241 0.916667 2.20916747 Pristionchus arcanus 1195655 Nematoda Nematoda 141 4.5e-29   NTclustered gi|390135492|gb|JQ399943.1| 1195655 g20816 i0 80 12.2323651452282 195 35 80 4 48 240 50 242 Pristionchus arcanus large subunit ribosomal protein 30 (rpl-30) gene, partial cds blastn 2948 141 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus arcanus
23695162 23695162 PRJNA760904_P_NODE_13779_length_257_cov_1.668478_g13722_i0 PRJNA760904 13779 257 1.668478 4.28798846 Caenorhabditis elegans 6239 Nematoda Nematoda 475 1.1699999999999999e-129   NTclustered gi|1972267560|ref|NM_070234.7| 6239 g13722 i0 100 2.93774319066148 257 0 100 0 1 257 280 24 Caenorhabditis elegans UPF0375 protein ule-4 (ule-4), mRNA blastn 755 475 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;