RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA760904" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA760904 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5845779 5845779 PRJNA760904_P_NODE_11585_length_274_cov_1.532338_g11528_i0 PRJNA760904 11585 274 1.532338 4.19860612 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 385 2.18e-102   NTclustered gi|291001018|ref|XM_002683030.1| 5762 g11528 i0 91.971 1 274 22 100 0 1 274 547 820 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_29343), partial mRNA blastn 274 385 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
7120979 7120979 PRJNA760904_P_NODE_16446_length_248_cov_0.880000_g16389_i0 PRJNA760904 16446 248 0.88 2.1824 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 145 3.6e-30   NTclustered gi|2119442191|ref|XM_044695471.1| 51637 g16389 i0 84.722 3.0241935483871 144 22 58 0 97 240 195 52 Naegleria lovaniensis uncharacterized protein (C9374_005693), partial mRNA blastn 750 145 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
11408757 11408757 PRJNA760904_P_NODE_2009_length_559_cov_1.845679_g1953_i0 PRJNA760904 2009 559 1.845679 10.31734561 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 63.9 2.54e-5   NTclustered gi|290997959|ref|XM_002681503.1| 5762 g1953 i0 95 6.74060822898032 40 2 7 0 28 67 1049 1088 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_63435), partial mRNA blastn 3768 63.9 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
17320524 17320524 PRJNA760904_P_NODE_14494_length_251_cov_32.904494_g14437_i0 PRJNA760904 14494 251 32.904494 82.59027994 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 132 2.84e-26   NTclustered gi|2031938990|emb|OD957471.1| 5763 g14437 i0 85.075 13.7171314741036 134 14 52 6 54 184 15195 15065 Naegleria fowleri Karachi_NF001 strain blastn 3443 132 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;