RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA760904" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA760904 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
742268 742268 PRJNA760904_P_NODE_501_length_1021_cov_24.913502_g464_i0 PRJNA760904 501 1021 24.913502 254.36685542 Spizellomyces punctatus 109760 Fungi Fungi 671 0   NTclustered gi|1027028346|ref|XM_016756817.1| 645134 g464 i0 80.313 85.4103819784525 894 171 87 5 74 965 2143 1253 Spizellomyces punctatus DAOM BR117 ADP,ATP carrier protein 1, mitochondrial, variant (SPPG_08669), partial mRNA blastn 87204 671 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
17320605 17320605 PRJNA760904_P_NODE_9454_length_292_cov_2.063927_g9397_i0 PRJNA760904 9454 292 2.063927 6.02666684 Polychytrium aggregatum 110093 Fungi Fungi 132 3.38e-26   NTclustered gi|2432139102|ref|XM_053107495.1| 110093 g9397 i0 77.328 28.3767123287671 247 40 81 12 39 275 67 307 Polychytrium aggregatum ribosomal protein L34e-domain-containing protein (BJ171DRAFT_421619), partial mRNA blastn 8286 132 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
18593885 18593885 PRJNA760904_P_NODE_10535_length_283_cov_1.147619_g10478_i0 PRJNA760904 10535 283 1.147619 3.24776177 Polychytrium aggregatum 110093 Fungi Fungi 154 6.96e-33   NTclustered gi|2432133635|ref|XM_053106612.1| 110093 g10478 i0 84.177 5.85159010600707 158 25 56 0 101 258 150 307 Polychytrium aggregatum uncharacterized protein (BJ171DRAFT_238669), mRNA blastn 1656 154 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;