RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA760904" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA760904 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
742205 742205 PRJNA760904_P_NODE_1201_length_700_cov_11.086124_g1148_i0 PRJNA760904 1201 700 11.086124 77.602868 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 326 3.73e-84   NTclustered gi|657012511|gb|KF302595.1| 2850 g1148 i0 86.577 49.2885714285714 298 36 42 4 205 500 3 298 Phaeodactylum tricornutum clone C854 ubiquitin-ribosomal protein fusion S27a mRNA, partial cds blastn 34502 326 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
12221910 12221910 PRJNA760904_P_NODE_570_length_966_cov_7.474804_g530_i0 PRJNA760904 570 966 7.474804 72.20660664 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 483 2.93e-131   NTclustered gi|657012367|gb|KF302531.1| 2850 g530 i0 89.529 53.5289855072464 382 38 39 2 316 696 390 10 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 51709 483 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
13496021 13496021 PRJNA760904_P_NODE_211_length_1381_cov_6.246942_g190_i0 PRJNA760904 211 1381 6.246942 86.27026902 Achnanthes kuwaitensis 483531 SAR_Eukaryotes SAR_Eukaryotes 739 0   NTclustered gi|225685850|dbj|AB461923.1| 483531 g190 i0 78.59 45.4757422157857 1149 224 83 18 49 1189 13 1147 Achnanthes kuwaitensis MAT mRNA for methionine S-adenosyl transferase, complete cds blastn 62802 739 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Mastogloiales Achnanthaceae Achnanthes Achnanthes kuwaitensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;