RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA760904" and tax_clade = "PVC group"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA760904 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2018264 2018264 PRJNA760904_P_NODE_21202_length_231_cov_2.417722_g21145_i0 PRJNA760904 21202 231 2.417722 5.58493782 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 339 1.41e-88   NTclustered gi|2874253768|emb|OY969715.1| 412056 g21145 i0 93.074 79.0735930735931 231 16 100 0 1 231 915849 915619 MAG: uncultured Verrucomicrobiae bacterium isolate MFD01916.bin.1.1 genome assembly, chromosome: 1 blastn 18266 339 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
3293511 3293511 PRJNA760904_P_NODE_15523_length_250_cov_0.870056_g15466_i0 PRJNA760904 15523 250 0.870056 2.17514 uncultured Chlamydiales CRG2 88251 Bacteria Bacteria 387 5.459999999999998e-103   NTclustered gi|4336560|gb|AF097185.1| 88251 g15466 i0 99.528 105.032 212 1 85 0 21 232 1 212 Uncultured Chlamydiales CRG2 16S ribosomal RNA gene, partial sequence blastn 26258 387 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     uncultured Chlamydiales CRG2
14771198 14771198 PRJNA760904_P_NODE_8672_length_304_cov_2.385281_g8615_i0 PRJNA760904 8672 304 2.385281 7.25125424 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 75 6.05e-9   NTclustered gi|2022020957|gb|CP059069.1| 2562705 g8615 i0 86.957 9.53618421052632 69 6 23 2 159 227 3177127 3177062 Akkermansiaceae bacterium strain AJA081-3 chromosome, complete genome blastn 2899 75 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;