RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA760904" and tax_clade = "Metamonada"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA760904 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13496013 13496013 PRJNA760904_P_NODE_19491_length_243_cov_0.905882_g19434_i0 PRJNA760904 19491 243 0.905882 2.20129326 Dientamoeba fragilis 43352 Parabasalia other_Eukaryota 139 1.63e-28   NTclustered gi|675304606|gb|KM186141.1| 43352 g19434 i0 78.319 31.0740740740741 226 41 91 8 9 230 606 827 Dientamoeba fragilis beta-tubulin 1 mRNA, partial cds blastn 7551 139 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Dientamoeba Dientamoeba fragilis
24968895 24968895 PRJNA760904_P_NODE_9320_length_294_cov_1.393665_g9263_i0 PRJNA760904 9320 294 1.393665 4.0973751 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 150 9.399999999999999e-32   NTclustered gi|2806441481|ref|XM_068497464.1| 1144522 g9263 i0 77.647 24.734693877551 255 51 86 5 38 289 151 402 Tritrichomonas foetus Histone H2A (TRFO_13820), partial mRNA blastn 7272 150 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;