RNAquarium Metadata Server
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contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA758770" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 16 ✖

bioproject 1

  • PRJNA758770 · 16 ✖

analysis 1

  • blastn · 16 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
740368 740368 PRJNA758770_S_NODE_14321_length_309_cov_1.322034_g14195_i0 PRJNA758770 14321 309 1.322034 4.08508506 Potexvirus citriflavivenae 3433772 Viruses Viruses 571 1.7899999999999995e-158   NTclustered gi|1822142639|gb|MK415926.1| 1214459 g14195 i0 100 86.0097087378641 309 0 100 0 1 309 4159 3851 Citrus yellow vein clearing virus isolate HP-MRJ, complete genome blastn 26577 571 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus citriflavivenae
3292149 3292149 PRJNA758770_S_NODE_663_length_1277_cov_3.324751_g603_i0 PRJNA758770 663 1277 3.324751 42.45707027 Potexvirus citriflavivenae 3433772 Viruses Viruses 2313 0   NTclustered gi|1822142639|gb|MK415926.1| 1214459 g603 i0 99.373 94.4244322631167 1276 8 99 0 1 1276 6235 7510 Citrus yellow vein clearing virus isolate HP-MRJ, complete genome blastn 120580 2313 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus citriflavivenae
3292182 3292182 PRJNA758770_S_NODE_7983_length_385_cov_1.362179_g7857_i0 PRJNA758770 7983 385 1.362179 5.24438915 Potexvirus citriflavivenae 3433772 Viruses Viruses 695 0   NTclustered gi|1214997675|gb|KX156739.1| 1214459 g7857 i0 99.221 83 385 3 100 0 1 385 1236 1620 Citrus yellow vein clearing virus isolate GD-STJ, complete genome blastn 31955 695 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus citriflavivenae
4569227 4569227 PRJNA758770_S_NODE_5604_length_447_cov_1.104278_g5478_i0 PRJNA758770 5604 447 1.104278 4.93612266 Mus musculus mobilized endogenous polytropic provirus 590745 Viruses Viruses 809 0   NTclustered gi|221326511|gb|FJ544576.1| 590745 g5478 i0 99.329 101.959731543624 447 3 100 0 1 447 3250 2804 Mus musculus mobilized endogenous polytropic provirus clone 5 truncated gag-pol polyprotein (gag) gene, complete cds blastn 45576 809 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Mus musculus mobilized endogenous polytropic provirus
8393870 8393870 PRJNA758770_S_NODE_23587_length_253_cov_0.866667_g23461_i0 PRJNA758770 23587 253 0.866667 2.19266751 Betaretrovirus murmamtum 3427295 Viruses Viruses 468 1.92e-127   NTclustered gi|6911285|gb|AF228552.1|AF228552 46608 g23461 i0 100 22.2687747035573 253 0 100 0 1 253 2266 2518 Exogenous mouse mammary tumor virus C3H complete proviral genome blastn 5634 468 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus murmamtum
9668944 9668944 PRJNA758770_S_NODE_18048_length_283_cov_1.147619_g17922_i0 PRJNA758770 18048 283 1.147619 3.24776177 Apscaviroid alphaflavivitis 3416569 Viruses Viruses 462 1.02e-125   NTclustered gi|2053420969|gb|MW732682.1| 12904 g17922 i0 96.763 81.4876325088339 278 8 98 1 6 283 1 277 Grapevine yellow speckle viroid 1 isolate BIO6-25J_GYSVd-1, complete genome blastn 23061 462 1 Viruses           Pospiviroidae Apscaviroid Apscaviroid alphaflavivitis
10944735 10944735 PRJNA758770_S_NODE_2489_length_655_cov_2.314433_g2369_i0 PRJNA758770 2489 655 2.314433 15.15953615 Potexvirus citriflavivenae 3433772 Viruses Viruses 1210 0   NTclustered gi|1822142639|gb|MK415926.1| 1214459 g2369 i0 100 80.7465648854962 655 0 100 0 1 655 5383 4729 Citrus yellow vein clearing virus isolate HP-MRJ, complete genome blastn 52889 1210 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus citriflavivenae
13494352 13494352 PRJNA758770_S_NODE_22691_length_255_cov_3.510989_g22565_i0 PRJNA758770 22691 255 3.510989 8.95302195 Potexvirus citriflavivenae 3433772 Viruses Viruses 462 9.03e-126   NTclustered gi|1214997668|gb|KX156738.1| 1214459 g22565 i0 99.605 81.4235294117647 253 1 99 0 3 255 4679 4427 Citrus yellow vein clearing virus isolate GD-JG, complete genome blastn 20763 462 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus citriflavivenae
13958727 13958727 PRJNA758770_S_NODE_28891_length_246_cov_1.473988_g28765_i0 PRJNA758770 28891 246 1.473988 3.62601048 Tobamovirus 12234 Viruses Viruses 453 5.2100000000000006e-123   NTclustered gi|1782797563|gb|MK933286.1| 12235 g28765 i0 100 99.5975609756098 245 0 99 0 2 246 4397 4153 Cucumber green mottle mosaic virus isolate GDLZ, complete genome blastn 24501 453 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus viridimaculae
14769434 14769434 PRJNA758770_S_NODE_21132_length_264_cov_1.617801_g21006_i0 PRJNA758770 21132 264 1.617801 4.27099464 Potexvirus citriflavivenae 3433772 Viruses Viruses 488 1.5499999999999999e-133   NTclustered gi|2866530880|gb|PQ567901.1| 1214459 g21006 i0 100 83.6666666666667 264 0 100 0 1 264 1277 1014 Citrus yellow vein clearing virus isolate CYVCV-FL-15, complete genome blastn 22088 488 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus citriflavivenae
16043113 16043113 PRJNA758770_S_NODE_17313_length_288_cov_1.027907_g17187_i0 PRJNA758770 17313 288 1.027907 2.96037216 Betaretrovirus murmamtum 3427295 Viruses Viruses 377 3.87e-100   NTclustered gi|6911279|gb|AF228551.1|AF228551 46608 g17187 i0 99.517 50.2083333333333 207 1 72 0 80 286 1277 1483 Exogenous mouse mammary tumor virus HeJ complete proviral genome blastn 14460 377 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus murmamtum
19867649 19867649 PRJNA758770_S_NODE_30936_length_244_cov_0.912281_g30810_i0 PRJNA758770 30936 244 0.912281 2.22596564 Caudoviricetes sp. 2832643 Viruses Viruses 189 1.6099999999999996e-43   NTclustered gi|2057119259|tpg|BK057927.1| 2832643 g30810 i0 81.938 0.930327868852459 227 38 93 3 4 229 22001 22225 MAG TPA_asm: Caudoviricetes sp. isolate ctw9w9, partial genome blastn 227 189 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
21142907 21142907 PRJNA758770_S_NODE_1397_length_858_cov_3.033121_g1301_i0 PRJNA758770 1397 858 3.033121 26.02417818 Potexvirus citriflavivenae 3433772 Viruses Viruses 1580 0   NTclustered gi|1214997710|gb|KX156744.1| 1214459 g1301 i0 99.883 81.7097902097902 858 1 100 0 1 858 5363 6220 Citrus yellow vein clearing virus isolate HN-GXP, complete genome blastn 70107 1580 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus citriflavivenae
21143492 21143492 PRJNA758770_S_NODE_9477_length_360_cov_1.560976_g9351_i0 PRJNA758770 9477 360 1.560976 5.6195136 Potexvirus citriflavivenae 3433772 Viruses Viruses 599 9.72e-167   NTclustered gi|1822142639|gb|MK415926.1| 1214459 g9351 i0 99.694 76.1722222222222 327 1 91 0 1 327 3511 3185 Citrus yellow vein clearing virus isolate HP-MRJ, complete genome blastn 27422 599 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus citriflavivenae
22417617 22417617 PRJNA758770_S_NODE_10638_length_344_cov_1.435424_g10512_i0 PRJNA758770 10638 344 1.435424 4.93785856 Potexvirus citriflavivenae 3433772 Viruses Viruses 636 7.059999999999998e-178   NTclustered gi|1822142639|gb|MK415926.1| 1214459 g10512 i0 100 89.6191860465116 344 0 100 0 1 344 26 369 Citrus yellow vein clearing virus isolate HP-MRJ, complete genome blastn 30829 636 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus citriflavivenae
22417689 22417689 PRJNA758770_S_NODE_13858_length_313_cov_1.104167_g13732_i0 PRJNA758770 13858 313 1.104167 3.45604271 Potexvirus citriflavivenae 3433772 Viruses Viruses 569 6.539999999999998e-158   NTclustered gi|764160352|ref|NC_026592.1| 1214459 g13732 i0 99.678 94.8753993610224 311 1 99 0 3 313 960 650 Citrus yellow vein clearing virus isolate CQ, complete genome blastn 29696 569 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus citriflavivenae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;