RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA758770" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA758770 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4569227 4569227 PRJNA758770_S_NODE_5604_length_447_cov_1.104278_g5478_i0 PRJNA758770 5604 447 1.104278 4.93612266 Mus musculus mobilized endogenous polytropic provirus 590745 Viruses Viruses 809 0   NTclustered gi|221326511|gb|FJ544576.1| 590745 g5478 i0 99.329 101.959731543624 447 3 100 0 1 447 3250 2804 Mus musculus mobilized endogenous polytropic provirus clone 5 truncated gag-pol polyprotein (gag) gene, complete cds blastn 45576 809 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Mus musculus mobilized endogenous polytropic provirus
8393870 8393870 PRJNA758770_S_NODE_23587_length_253_cov_0.866667_g23461_i0 PRJNA758770 23587 253 0.866667 2.19266751 Betaretrovirus murmamtum 3427295 Viruses Viruses 468 1.92e-127   NTclustered gi|6911285|gb|AF228552.1|AF228552 46608 g23461 i0 100 22.2687747035573 253 0 100 0 1 253 2266 2518 Exogenous mouse mammary tumor virus C3H complete proviral genome blastn 5634 468 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus murmamtum
16043113 16043113 PRJNA758770_S_NODE_17313_length_288_cov_1.027907_g17187_i0 PRJNA758770 17313 288 1.027907 2.96037216 Betaretrovirus murmamtum 3427295 Viruses Viruses 377 3.87e-100   NTclustered gi|6911279|gb|AF228551.1|AF228551 46608 g17187 i0 99.517 50.2083333333333 207 1 72 0 80 286 1277 1483 Exogenous mouse mammary tumor virus HeJ complete proviral genome blastn 14460 377 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus murmamtum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;