RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA758770" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA758770 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5032997 5032997 PRJNA758770_S_NODE_25024_length_251_cov_0.876404_g24898_i0 PRJNA758770 25024 251 0.876404 2.19977404 Methanothermobacter 145260 Archaea Archaea 464 2.47e-126   NTclustered gi|2419024990|gb|CP064337.1| 145262 g24898 i0 100 6.98406374501992 251 0 100 0 1 251 1700709 1700959 Methanothermobacter thermautotrophicus strain Z-245 chromosome, complete genome blastn 1753 464 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter thermautotrophicus
14769674 14769674 PRJNA758770_S_NODE_31992_length_243_cov_0.917647_g31866_i0 PRJNA758770 31992 243 0.917647 2.22988221 Methanobacterium sp. MB1 1379702 Archaea Archaea 449 6.65e-122   NTclustered gi|557945513|emb|HG425166.1| 1379702 g31866 i0 100 3.97530864197531 243 0 100 0 1 243 1988402 1988160 Methanobacterium sp. MB1 complete sequence blastn 966 449 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. MB1
20331178 20331178 PRJNA758770_S_NODE_29496_length_246_cov_0.901734_g29370_i0 PRJNA758770 29496 246 0.901734 2.21826564 Methanobacterium 2160 Archaea Archaea 455 1.4500000000000002e-123   NTclustered gi|952971377|emb|LN734822.1| 2162 g29370 i0 100 7.72764227642276 246 0 100 0 1 246 2245275 2245030 Methanobacterium formicicum genome assembly isolate Mb9, chromosome : I blastn 1901 455 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;