RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA758398" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA758398 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7118661 7118661 PRJNA758398_S_NODE_39446_length_172_cov_1.243902_g39305_i0 PRJNA758398 39446 172 1.243902 2.13951144 uncultured Desulfobacterium sp. 201089 Bacteria Bacteria 60.2 8.62e-5   NTclustered gi|2814788371|emb|OY764894.2| 201089 g39305 i0 97.143 2.57558139534884 35 1 20 0 130 164 146400 146366 MAG: uncultured Desulfobacterium sp. isolate 35125921-b51f-40db-957b-bccbeeb29ead genome assembly, chromosome: 1 blastn 443 60.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteriaceae Desulfobacterium uncultured Desulfobacterium sp.
21142108 21142108 PRJNA758398_S_NODE_17477_length_240_cov_1.068063_g17336_i0 PRJNA758398 17477 240 1.068063 2.5633512 Desulfuromonas versatilis 2802975 Bacteria Bacteria 196 9.42e-46   NTclustered gi|2065532709|dbj|AP024355.1| 2802975 g17336 i0 82.805 88.9625 221 36 92 2 1 220 4581178 4581397 Desulfuromonas versatilis NIT-T3 DNA, complete genome blastn 21351 196 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas versatilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;