RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA758398" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA758398 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
739461 739461 PRJNA758398_S_NODE_12321_length_279_cov_0.886957_g12180_i0 PRJNA758398 12321 279 0.886957 2.47461003 Spirochaetota bacterium 2202144 Bacteria Bacteria 52.8 0.026   NTclustered gi|2649718686|emb|OZ001216.1| 2202144 g12180 i0 100 0.100358422939068 28 0 10 0 2 29 76012 75985 MAG: Spirochaetota bacterium isolate 8b34eeeb-0c33-43c6-8155-d1d64b2f6b4c genome assembly, chromosome: 9 blastn 28 52.8 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
19866873 19866873 PRJNA758398_S_NODE_51456_length_162_cov_0.964602_g51315_i0 PRJNA758398 51456 162 0.964602 1.56265524 Leptospira santarosai 28183 Bacteria Bacteria 137 3.6199999999999997e-28   NTclustered gi|1370526542|gb|CP027843.1| 28183 g51315 i0 87.931 3.67901234567901 116 14 72 0 1 116 1177449 1177334 Leptospira santarosai strain U160 chromosome I blastn 596 137 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira santarosai
22417319 22417319 PRJNA758398_S_NODE_52658_length_162_cov_0.902655_g52517_i0 PRJNA758398 52658 162 0.902655 1.4623011 Borrelia sp. A-FGy1 2608247 Bacteria Bacteria 54.7 0.004   NTclustered gi|1886106780|gb|CP043682.1| 2608247 g52517 i0 100 0.351851851851852 29 0 18 0 117 145 497254 497226 Borrelia sp. A-FGy1 chromosome blastn 57 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia sp. A-FGy1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;