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contig_metadata

20 rows where analysis = "blastn", bioproject = "PRJNA758398" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 20 ✖

tax_clade 1

bioproject 1

  • PRJNA758398 · 20 ✖

analysis 1

  • blastn · 20 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2015894 2015894 PRJNA758398_S_NODE_4002_length_473_cov_2.929245_g3861_i0 PRJNA758398 4002 473 2.929245 13.85532885 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 239 3.29e-58   NTclustered gi|166041070|emb|CU355542.1| 100861 g3861 i0 79.819 32.0021141649049 332 63 70 4 89 418 120 449 Aphanomyces euteiches cDNA blastn 15137 239 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
3290700 3290700 PRJNA758398_S_NODE_10623_length_298_cov_1.120482_g10482_i0 PRJNA758398 10623 298 1.120482 3.33903636 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 274 5.43e-69   NTclustered gi|2795049776|ref|XM_067938656.1| 4785 g10482 i0 84.138 4.09395973154362 290 38 96 4 1 286 231 516 Phytophthora cinnamomi polyadenylate-binding protein 1-B (IUM83_13951), partial mRNA blastn 1220 274 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
3290801 3290801 PRJNA758398_S_NODE_17723_length_238_cov_2.042328_g17582_i0 PRJNA758398 17723 238 2.042328 4.86074064 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 100 7.53e-17   NTclustered gi|675165376|ref|XM_008893325.1| 761204 g17582 i0 95.312 21.4915966386555 64 1 26 2 90 152 638 700 Phytophthora parasitica INRA-310 hypothetical protein mRNA blastn 5115 100 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
3290815 3290815 PRJNA758398_S_NODE_18583_length_234_cov_1.102703_g18442_i0 PRJNA758398 18583 234 1.102703 2.58032502 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 174 4.29e-39   NTclustered gi|813125660|ref|XM_012341391.1| 695850 g18442 i0 80.519 45.7991452991453 231 41 98 4 4 232 262 34 Saprolegnia parasitica CBS 223.65 elongation factor 2 mRNA blastn 10717 174 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
3291149 3291149 PRJNA758398_S_NODE_44743_length_166_cov_0.871795_g44602_i0 PRJNA758398 44743 166 0.871795 1.4471797 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 178 2.2e-40   NTclustered gi|2794914128|ref|XM_067892206.1| 164328 g44602 i0 89.362 60.9036144578313 141 15 85 0 26 166 881 1021 Phytophthora ramorum Inositol-3-phosphate synthase (KRP23_6954), partial mRNA blastn 10110 178 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
5843104 5843104 PRJNA758398_S_NODE_17865_length_238_cov_0.962963_g17724_i0 PRJNA758398 17865 238 0.962963 2.29185194 Paralagenidium karlingii 1440115 SAR_Eukaryotes SAR_Eukaryotes 139 1.6e-28   NTclustered gi|2554484921|ref|NC_080886.1| 1440115 g17724 i0 85.401 55.6848739495798 137 16 57 4 90 224 41793 41659 Paralagenidium karlingii isolate 19-09020 mitochondrion, complete genome blastn 13253 139 1 Eukaryota Sar   Oomycota Peronosporomycetes     Paralagenidium Paralagenidium karlingii
5843245 5843245 PRJNA758398_S_NODE_28245_length_199_cov_1.020000_g28104_i0 PRJNA758398 28245 199 1.02 2.0298 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 167 5.91e-37   NTclustered gi|695407986|ref|XM_009526229.1| 67593 g28104 i0 90.551 48.5628140703518 127 10 63 2 8 133 421 546 Phytophthora sojae hypothetical protein partial mRNA blastn 9664 167 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
8857476 8857476 PRJNA758398_S_NODE_52107_length_162_cov_0.902655_g51966_i0 PRJNA758398 52107 162 0.902655 1.4623011 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 84.2 4.78e-12   NTclustered gi|2795048588|ref|XM_067932045.1| 4785 g51966 i0 76.543 6.51851851851852 162 32 98 4 2 160 470 312 Phytophthora cinnamomi 40S ribosomal protein S6 (IUM83_07725), partial mRNA blastn 1056 84.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
9668424 9668424 PRJNA758398_S_NODE_46148_length_165_cov_0.879310_g46007_i0 PRJNA758398 46148 165 0.87931 1.4508615 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 172 1.02e-38   NTclustered gi|695381842|ref|XM_009518920.1| 67593 g46007 i0 85.455 6 165 24 100 0 1 165 31 195 Phytophthora sojae hypothetical protein partial mRNA blastn 990 172 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
9668431 9668431 PRJNA758398_S_NODE_46528_length_165_cov_0.879310_g46387_i0 PRJNA758398 46528 165 0.87931 1.4508615 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 126 8.02e-25   NTclustered gi|2795024233|ref|XM_067938299.1| 4785 g46387 i0 86.325 1.58181818181818 117 14 70 2 18 133 924 809 Phytophthora cinnamomi T-complex protein 1, alpha subunit (IUM83_13609), partial mRNA blastn 261 126 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
16042446 16042446 PRJNA758398_S_NODE_35113_length_181_cov_1.522727_g34972_i0 PRJNA758398 35113 181 1.522727 2.75613587 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 141 3.19e-29   NTclustered gi|673019533|ref|XM_008865506.1| 157072 g34972 i0 88.696 10.5745856353591 115 13 64 0 67 181 107 221 Aphanomyces invadans hypothetical protein mRNA blastn 1914 141 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
18591765 18591765 PRJNA758398_S_NODE_895_length_920_cov_2.160735_g816_i0 PRJNA758398 895 920 2.160735 19.878762 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 503 2.14e-137   NTclustered gi|695416746|ref|XM_009528626.1| 67593 g816 i0 82.137 49.6815217391304 599 95 64 10 1 593 433 1025 Phytophthora sojae hypothetical protein mRNA blastn 45707 503 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
20330838 20330838 PRJNA758398_S_NODE_51636_length_162_cov_0.902655_g51495_i0 PRJNA758398 51636 162 0.902655 1.4623011 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 228 2.0899999999999995e-55   NTclustered gi|2795052452|ref|XM_067926699.1| 4785 g51495 i0 92.949 43.9753086419753 156 11 96 0 5 160 218 63 Phytophthora cinnamomi caltractin (IUM83_02754), partial mRNA blastn 7124 228 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
22417217 22417217 PRJNA758398_S_NODE_4078_length_469_cov_1.566667_g3937_i0 PRJNA758398 4078 469 1.566667 7.34766823 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 154 1.2099999999999999e-32   NTclustered gi|669145241|ref|XM_008609961.1| 1156394 g3937 i0 75.51 33.6567164179104 343 68 71 14 58 392 452 118 Saprolegnia diclina VS20 50S ribosomal protein L22e mRNA blastn 15785 154 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
22882093 22882093 PRJNA758398_S_NODE_938_length_903_cov_2.925059_g855_i0 PRJNA758398 938 903 2.925059 26.41328277 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 291 1.77e-73   NTclustered gi|695427108|ref|XM_009531298.1| 67593 g855 i0 76.391 18.4518272425249 593 108 64 27 306 882 585 9 Phytophthora sojae hypothetical protein mRNA blastn 16662 292 0.996575342465753 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
23692895 23692895 PRJNA758398_S_NODE_49219_length_163_cov_1.587719_g49078_i0 PRJNA758398 49219 163 1.587719 2.58798197 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 132 1.7e-26   NTclustered gi|695387581|ref|XM_009520634.1| 67593 g49078 i0 86.555 0.730061349693252 119 16 73 0 16 134 1287 1169 Phytophthora sojae pyrophosphatase partial mRNA blastn 119 132 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
24966272 24966272 PRJNA758398_S_NODE_28940_length_197_cov_1.047297_g28799_i0 PRJNA758398 28940 197 1.047297 2.06317509 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 110 9.98e-20   NTclustered gi|2795045055|ref|XM_067937582.1| 4785 g28799 i0 89.655 34.0812182741117 87 7 44 2 112 197 313 228 Phytophthora cinnamomi ribosomal protein L34 (IUM83_12935), partial mRNA blastn 6714 110 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
24966351 24966351 PRJNA758398_S_NODE_35820_length_180_cov_0.877863_g35679_i0 PRJNA758398 35820 180 0.877863 1.5801534 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 95.3 2.5e-15   NTclustered gi|813142527|ref|XM_012343931.1| 695850 g35679 i0 88.462 1.15555555555556 78 9 43 0 79 156 1132 1209 Saprolegnia parasitica CBS 223.65 60S ribosomal protein L3 mRNA blastn 208 95.3 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
24966433 24966433 PRJNA758398_S_NODE_43780_length_166_cov_1.307692_g43639_i0 PRJNA758398 43780 166 1.307692 2.17076872 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 62.1 2.31e-5   NTclustered gi|166034832|emb|CU351832.1| 100861 g43639 i0 97.222 0.216867469879518 36 1 22 0 35 70 73 108 Aphanomyces euteiches cDNA blastn 36 62.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
25431021 25431021 PRJNA758398_S_NODE_10140_length_304_cov_1.854902_g9999_i0 PRJNA758398 10140 304 1.854902 5.63890208 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 254 7.24e-63   NTclustered gi|156987611|gb|EU079758.1| 4785 g9999 i0 83.755 90.1085526315789 277 35 88 9 36 304 348 74 Phytophthora cinnamomi isolate PD_00120(P2159) translation elongation factor 1-alpha (EF1A) gene, partial cds blastn 27393 255 0.996078431372549 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;