RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA758398" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA758398 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2015519 2015519 PRJNA758398_S_NODE_1042_length_862_cov_2.725707_g951_i0 PRJNA758398 1042 862 2.725707 23.49559434 Caenorhabditis elegans 6239 Nematoda Nematoda 108 1.83e-18   NTclustered gi|1972229606|ref|NM_001392410.1| 6239 g951 i0 82.031 0.885150812064965 128 21 15 2 194 321 838 713 Caenorhabditis elegans phenylalanine--tRNA ligase (fars-1), mRNA blastn 763 108 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
8392849 8392849 PRJNA758398_S_NODE_1667_length_699_cov_1.401538_g1550_i0 PRJNA758398 1667 699 1.401538 9.79675062 Strongyloides ratti 34506 Nematoda Nematoda 73.1 5.36e-8   NTclustered gi|1376154429|ref|XM_024648508.1| 34506 g1550 i0 72.332 0.361945636623748 253 62 36 8 50 298 1008 1256 Strongyloides ratti Dihydropyrimidinase-related protein 2 (SRAE_X000139900), partial mRNA blastn 253 73.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
8393160 8393160 PRJNA758398_S_NODE_42847_length_167_cov_0.864407_g42706_i0 PRJNA758398 42847 167 0.864407 1.44355969 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.014   NTclustered gi|687022644|emb|LM525558.1| 174720 g42706 i0 100 0.167664670658683 28 0 17 0 5 32 366787 366760 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000004 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
9668097 9668097 PRJNA758398_S_NODE_1788_length_679_cov_3.390476_g1668_i0 PRJNA758398 1788 679 3.390476 23.02133204 Caenorhabditis briggsae 6238 Nematoda Nematoda 54.7 0.019   NTclustered gi|2158425669|ref|XM_045243700.1| 6238 g1668 i0 100 0.0427098674521355 29 0 4 0 547 575 906 878 Caenorhabditis briggsae Protein CBR-PTR-12 (Cbr-ptr-12), partial mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
9668132 9668132 PRJNA758398_S_NODE_20348_length_226_cov_0.971751_g20207_i0 PRJNA758398 20348 226 0.971751 2.19615726 Caenorhabditis remanei 31234 Nematoda Nematoda 167 6.8799999999999995e-37   NTclustered gi|2445362687|ref|XM_053726842.1| 31234 g20207 i0 87.943 35.5221238938053 141 17 62 0 86 226 574 714 Caenorhabditis remanei uncharacterized protein (GCK72_008464), partial mRNA blastn 8028 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
10943861 10943861 PRJNA758398_S_NODE_31009_length_191_cov_1.436620_g30868_i0 PRJNA758398 31009 191 1.43662 2.7439442 Strongyloides papillosus 174720 Nematoda Nematoda 100 5.78e-17   NTclustered gi|687022641|emb|LM525555.1| 174720 g30868 i0 81.301 4.41884816753927 123 23 64 0 15 137 877807 877929 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000001 blastn 844 100 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
12219450 12219450 PRJNA758398_S_NODE_34050_length_184_cov_1.007407_g33909_i0 PRJNA758398 34050 184 1.007407 1.85362888 Strongyloides papillosus 174720 Nematoda Nematoda 60.2 9.38e-5   NTclustered gi|687022656|emb|LM525570.1| 174720 g33909 i0 100 0.173913043478261 32 0 17 0 2 33 240165 240134 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000005 blastn 32 60.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
13493387 13493387 PRJNA758398_S_NODE_20211_length_226_cov_1.728814_g20070_i0 PRJNA758398 20211 226 1.728814 3.90711964 Brugia malayi 6279 Nematoda Nematoda 58.4 4.32e-4   NTclustered gi|2082283944|ref|XM_043080087.1| 6279 g20070 i0 100 4.31858407079646 31 0 14 0 194 224 156 126 Brugia malayi Uncharacterized protein (Bma-ceh-2), partial mRNA blastn 976 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
16507230 16507230 PRJNA758398_S_NODE_15533_length_252_cov_1.344828_g15392_i0 PRJNA758398 15533 252 1.344828 3.38896656 Diplogastrellus 516119 Nematoda Nematoda 198 2.77e-46   NTclustered gi|256709130|gb|GQ422217.1| 669117 g15392 i0 81.857 27.797619047619 237 41 94 2 3 238 418 653 Diplogastrellus gracilis large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 7005 198 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Diplogastrellus Diplogastrellus gracilis
18591554 18591554 PRJNA758398_S_NODE_40715_length_169_cov_1.700000_g40574_i0 PRJNA758398 40715 169 1.7 2.873 Caenorhabditis remanei 31234 Nematoda Nematoda 58.4 3.03e-4   NTclustered gi|2445350983|ref|XM_053723347.1| 31234 g40574 i0 100 0.183431952662722 31 0 18 0 96 126 235 205 Caenorhabditis remanei uncharacterized protein (GCK72_002287), partial mRNA blastn 31 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;