RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

18 rows where analysis = "blastn", bioproject = "PRJNA758398" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 18 ✖

tax_clade 1

bioproject 1

  • PRJNA758398 · 18 ✖

analysis 1

  • blastn · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3290888 3290888 PRJNA758398_S_NODE_22903_length_215_cov_2.048193_g22762_i0 PRJNA758398 22903 215 2.048193 4.40361495 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 54.7 0.005   NTclustered gi|470377551|ref|XM_004333349.1| 1257118 g22762 i0 100 0.786046511627907 29 0 13 0 65 93 700 672 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_135630), partial mRNA blastn 169 54.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8392819 8392819 PRJNA758398_S_NODE_14407_length_260_cov_1.862559_g14266_i0 PRJNA758398 14407 260 1.862559 4.8426534 Ripella sp. 805 1217113 Discosea other_Eukaryota 388 1.59e-103   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g14266 i0 93.87 101.530769230769 261 10 100 6 1 260 283 28 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 26398 388 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
9668407 9668407 PRJNA758398_S_NODE_4428_length_450_cov_2.683292_g4287_i0 PRJNA758398 4428 450 2.683292 12.074814 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 278 6.61e-70   NTclustered gi|470442906|ref|XM_004339540.1| 1257118 g4287 i0 84.507 27.5866666666667 284 40 63 4 92 373 302 21 Acanthamoeba castellanii str. Neff 60S ribosomal protein, putative (ACA1_063390), partial mRNA blastn 12414 278 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13493491 13493491 PRJNA758398_S_NODE_28951_length_197_cov_1.033784_g28810_i0 PRJNA758398 28951 197 1.033784 2.03655448 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 63.9 7.88e-6   NTclustered gi|470423488|ref|XM_004337555.1| 1257118 g28810 i0 97.297 0.187817258883249 37 1 19 0 53 89 37 73 Acanthamoeba castellanii str. Neff ribosomal protein L23, putative (ACA1_164710), partial mRNA blastn 37 63.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13493686 13493686 PRJNA758398_S_NODE_4471_length_448_cov_1.964912_g4330_i0 PRJNA758398 4471 448 1.964912 8.80280576 Ripella platypodia 2047821 Discosea other_Eukaryota 658 0   NTclustered gi|1269228372|gb|MF683497.1| 2047821 g4330 i0 93.392 101.232142857143 454 15 100 12 1 448 989 545 Ripella platypodia clone 26.9.29 18S ribosomal RNA gene, partial sequence blastn 45352 658 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
14768414 14768414 PRJNA758398_S_NODE_11472_length_287_cov_2.357143_g11331_i0 PRJNA758398 11472 287 2.357143 6.76500041 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 204 6.919999999999999e-48   NTclustered gi|470442906|ref|XM_004339540.1| 1257118 g11331 i0 81.633 1.801393728223 245 45 85 0 41 285 269 25 Acanthamoeba castellanii str. Neff 60S ribosomal protein, putative (ACA1_063390), partial mRNA blastn 517 204 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14768428 14768428 PRJNA758398_S_NODE_12692_length_275_cov_1.668142_g12551_i0 PRJNA758398 12692 275 1.668142 4.5873905 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 276 1.38e-69   NTclustered gi|470398688|ref|XM_004335296.1| 1257118 g12551 i0 88.839 125.2 224 25 81 0 3 226 224 1 Acanthamoeba castellanii str. Neff polyubiquitin, putative (ACA1_239270), partial mRNA blastn 34430 276 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16042141 16042141 PRJNA758398_S_NODE_12253_length_279_cov_2.056522_g12112_i0 PRJNA758398 12253 279 2.056522 5.73769638 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 171 6.799999999999999e-38   NTclustered gi|470420395|ref|XM_004337241.1| 1257118 g12112 i0 82.412 8.36200716845878 199 31 71 3 1 197 197 1 Acanthamoeba castellanii str. Neff eukaryotic translation elongation factor 2, putative (ACA1_220140), partial mRNA blastn 2333 171 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16042476 16042476 PRJNA758398_S_NODE_37493_length_176_cov_1.204724_g37352_i0 PRJNA758398 37493 176 1.204724 2.12031424 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 215 1.79e-51   NTclustered gi|470421212|ref|XM_004337322.1| 1257118 g37352 i0 88.636 90.9261363636364 176 20 100 0 1 176 184 9 Acanthamoeba castellanii str. Neff actin, putative (ACA1_328920), partial mRNA blastn 16003 215 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17317757 17317757 PRJNA758398_S_NODE_14974_length_256_cov_1.314010_g14833_i0 PRJNA758398 14974 256 1.31401 3.3638656 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 171 6.16e-38   NTclustered gi|470459156|ref|XM_004341277.1| 1257118 g14833 i0 79.675 4.703125 246 42 95 6 4 245 761 520 Acanthamoeba castellanii str. Neff ribosomal protein L3, putative (ACA1_264110), partial mRNA blastn 1204 171 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17318034 17318034 PRJNA758398_S_NODE_34674_length_182_cov_1.451128_g34533_i0 PRJNA758398 34674 182 1.451128 2.64105296 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 327 2.3e-85   NTclustered gi|470467737|ref|XM_004341780.1| 1257118 g34533 i0 100 51.4285714285714 177 0 97 0 6 182 1131 955 Acanthamoeba castellanii str. Neff elongation factor 1-alpha, putative (ACA1_200430), partial mRNA blastn 9360 327 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18591363 18591363 PRJNA758398_S_NODE_2255_length_615_cov_2.236749_g2124_i0 PRJNA758398 2255 615 2.236749 13.75600635 Paramoeba branchiphila 308475 Discosea other_Eukaryota 418 5.219999999999999e-112   NTclustered gi|226347442|gb|FJ807261.1| 308475 g2124 i0 79.032 55.6065040650407 620 120 100 10 1 615 840 226 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 34198 418 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
18591659 18591659 PRJNA758398_S_NODE_49795_length_163_cov_0.894737_g49654_i0 PRJNA758398 49795 163 0.894737 1.45842131 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 182 1.66e-41   NTclustered gi|470484670|ref|XM_004344041.1| 1257118 g49654 i0 87.821 74.0306748466258 156 17 95 2 1 155 274 120 Acanthamoeba castellanii str. Neff Eukaryotic initiation factor 4A, putative (ACA1_054340), partial mRNA blastn 12067 182 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19866464 19866464 PRJNA758398_S_NODE_17256_length_241_cov_1.359375_g17115_i0 PRJNA758398 17256 241 1.359375 3.27609375 Ripella decalvata 2047822 Discosea other_Eukaryota 407 4.0199999999999995e-109   NTclustered gi|1269228408|gb|MF683533.1| 2047822 g17115 i0 97.107 100.593360995851 242 5 100 2 1 241 276 516 Ripella decalvata clone 26.1.44 18S ribosomal RNA gene, partial sequence blastn 24243 407 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
21142516 21142516 PRJNA758398_S_NODE_51477_length_162_cov_0.902655_g51336_i0 PRJNA758398 51477 162 0.902655 1.4623011 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 148 1.6699999999999999e-31   NTclustered gi|470443476|ref|XM_004339605.1| 1257118 g51336 i0 93.878 0.604938271604938 98 6 60 0 65 162 1124 1027 Acanthamoeba castellanii str. Neff NADH dehydrogenase, putative (ACA1_064240), partial mRNA blastn 98 148 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23692850 23692850 PRJNA758398_S_NODE_44139_length_166_cov_0.871795_g43998_i0 PRJNA758398 44139 166 0.871795 1.4471797 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 71.3 3.84e-8   NTclustered gi|470442940|ref|XM_004339544.1| 1257118 g43998 i0 89.474 0.801204819277108 57 4 34 2 90 145 644 589 Acanthamoeba castellanii str. Neff RhoGEF domain containing protein (ACA1_063430), partial mRNA blastn 133 71.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24966426 24966426 PRJNA758398_S_NODE_43140_length_167_cov_0.864407_g42999_i0 PRJNA758398 43140 167 0.864407 1.44355969 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 298 1.63e-76   NTclustered gi|470406900|ref|XM_004335952.1| 1257118 g42999 i0 98.802 97.3592814371257 167 2 100 0 1 167 469 303 Acanthamoeba castellanii str. Neff ribosomal protein S4, putative (ACA1_365780), partial mRNA blastn 16259 298 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24966548 24966548 PRJNA758398_S_NODE_6040_length_388_cov_1.106195_g5899_i0 PRJNA758398 6040 388 1.106195 4.2920366 Paramoeba branchiphila 308475 Discosea other_Eukaryota 248 4.4e-61   NTclustered gi|226347442|gb|FJ807261.1| 308475 g5899 i0 79.272 39.3685567010309 357 70 91 4 34 388 727 373 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 15275 248 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;