RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA758398" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA758398 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9668002 9668002 PRJNA758398_S_NODE_11648_length_285_cov_3.495763_g11507_i0 PRJNA758398 11648 285 3.495763 9.96292455 Polychytrium aggregatum 110093 Fungi Fungi 165 3.2400000000000004e-36   NTclustered gi|2432159776|ref|XM_053111801.1| 110093 g11507 i0 90.4 38.7929824561404 125 12 44 0 13 137 269 393 Polychytrium aggregatum ribosomal protein S8e/ribosomal biogenesis NSA2 (BJ171DRAFT_514033), mRNA blastn 11056 165 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
13493792 13493792 PRJNA758398_S_NODE_5891_length_392_cov_1.685131_g5750_i0 PRJNA758398 5891 392 1.685131 6.60571352 Batrachochytrium dendrobatidis 109871 Fungi Fungi 56.5 0.003   NTclustered gi|2897839259|gb|CP161931.1| 109871 g5750 i0 100 0.076530612244898 30 0 8 0 7 36 710928 710957 Batrachochytrium dendrobatidis strain JEL423 chromosome 9 blastn 30 56.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis
17318257 17318257 PRJNA758398_S_NODE_55034_length_158_cov_2.275229_g54893_i0 PRJNA758398 55034 158 2.275229 3.59486182 Polychytrium aggregatum 110093 Fungi Fungi 75 2.79e-9   NTclustered gi|2432143220|ref|XM_053115507.1| 110093 g54893 i0 100 1.24683544303797 40 0 34 0 42 81 1155 1194 Polychytrium aggregatum uncharacterized protein (BJ171DRAFT_62544), mRNA blastn 197 75 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
17782019 17782019 PRJNA758398_S_NODE_33294_length_185_cov_1.875000_g33153_i0 PRJNA758398 33294 185 1.875 3.46875 Eukaryota 2759 Fungi Fungi 172 1.16e-38   NTclustered gi|387233096|gb|JN033858.1| 4757 g33153 i0 83.696 38.2378378378378 184 28 99 2 3 185 853 671 Neocallimastix frontalis strain PMA02 isocitrate dehydrogenase (IDH1) mRNA, complete cds blastn 7074 172 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Neocallimastix Neocallimastix frontalis
19866483 19866483 PRJNA758398_S_NODE_19036_length_231_cov_2.434066_g18895_i0 PRJNA758398 19036 231 2.434066 5.62269246 Synchytrium microbalum 1806994 Fungi Fungi 174 4.22e-39   NTclustered gi|1759161090|ref|XM_031170872.1| 1806994 g18895 i0 82.039 81.1038961038961 206 35 89 2 27 231 1238 1034 Synchytrium microbalum succinate dehydrogenase (SmJEL517_g04944), partial mRNA blastn 18735 174 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
23692936 23692936 PRJNA758398_S_NODE_53099_length_161_cov_1.366071_g52958_i0 PRJNA758398 53099 161 1.366071 2.19937431 Synchytrium microbalum 1806994 Fungi Fungi 60.2 7.99e-5   NTclustered gi|1759150185|ref|XM_031168908.1| 1806994 g52958 i0 100 0.198757763975155 32 0 20 0 43 74 1555 1586 Synchytrium microbalum uncharacterized protein (SmJEL517_g02980), partial mRNA blastn 32 60.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
24966337 24966337 PRJNA758398_S_NODE_34840_length_182_cov_1.150376_g34699_i0 PRJNA758398 34840 182 1.150376 2.09368432 Batrachochytrium dendrobatidis 109871 Fungi Fungi 135 1.4900000000000002e-27   NTclustered gi|575471771|ref|XM_006675116.1| 684364 g34699 i0 83.916 78.5824175824176 143 21 78 2 2 143 788 929 Batrachochytrium dendrobatidis JAM81 protein phosphatase 2A (BATDEDRAFT_18460), mRNA blastn 14302 135 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;