RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA758398" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA758398 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3291155 3291155 PRJNA758398_S_NODE_45163_length_166_cov_0.871795_g45022_i0 PRJNA758398 45163 166 0.871795 1.4471797 Blastocladiella emersonii 4808 Fungi Fungi 156 1.03e-33   NTclustered gi|209427640|ref|NC_011360.1| 4808 g45022 i0 100 1.51807228915663 84 0 51 0 1 84 33790 33707 Blastocladiella emersonii mitochondrion, complete genome blastn 252 156 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
23692436 23692436 PRJNA758398_S_NODE_12479_length_277_cov_1.565789_g12338_i0 PRJNA758398 12479 277 1.565789 4.33723553 Blastocladiella emersonii 4808 Fungi Fungi 202 2.39e-47   NTclustered gi|684989|gb|L22497.1|BSIAHSP70X 4808 g12338 i0 79.856 88.3465703971119 278 54 100 2 1 277 2216 1940 Blastocladiella emersonii heat shock protein (hsp70) gene, complete cds blastn 24472 202 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
23692712 23692712 PRJNA758398_S_NODE_3279_length_521_cov_6.561441_g3140_i0 PRJNA758398 3279 521 6.561441 34.18510761 Blastocladiella emersonii 4808 Fungi Fungi 359 2.69e-94   NTclustered gi|117422539|gb|EF064246.1| 4808 g3140 i0 81.195 41.5124760076775 452 79 86 6 7 455 566 118 Blastocladiella emersonii elongation factor alpha-like protein mRNA, complete cds blastn 21628 359 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;