RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA758398" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 5 ✖

bioproject 1

  • PRJNA758398 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1204283 1204283 PRJNA758398_S_NODE_22241_length_218_cov_1.171598_g22100_i0 PRJNA758398 22241 218 1.171598 2.55408364 Haloplanus 376170 Archaea Archaea 80.5 8.84e-11   NTclustered gi|1785199060|gb|CP034345.1| 1816183 g22100 i0 100 44.5733944954128 43 0 20 0 3 45 768248 768290 Haloplanus rallus strain MBLA0036 chromosome, complete genome blastn 9717 80.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloplanus Haloplanus rallus
4568110 4568110 PRJNA758398_S_NODE_2944_length_549_cov_3.598000_g2806_i0 PRJNA758398 2944 549 3.598 19.75302 uncultured Methanoregula sp. 1005933 Archaea Archaea 835 0   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g2806 i0 97.925 235.868852459016 482 10 88 0 1 482 3117088 3117569 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 129492 835 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
5843307 5843307 PRJNA758398_S_NODE_33525_length_185_cov_1.125000_g33384_i0 PRJNA758398 33525 185 1.125 2.08125 Halobaculum lipolyticum 3032001 Archaea Archaea 54.7 0.004   NTclustered gi|2511738008|gb|CP126154.1| 3032001 g33384 i0 96.97 0.178378378378378 33 0 18 1 71 103 1995108 1995139 Halobaculum lipolyticum strain DT31 chromosome, complete genome blastn 33 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobaculum Halobaculum lipolyticum
12219322 12219322 PRJNA758398_S_NODE_25010_length_208_cov_2.566038_g24869_i0 PRJNA758398 25010 208 2.566038 5.33735904 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 52.8 0.018   NTclustered gi|985614202|gb|CP010834.1| 1609968 g24869 i0 100 0.134615384615385 28 0 13 0 28 55 847019 846992 Methanobrevibacter sp. YE315, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
24966331 24966331 PRJNA758398_S_NODE_34020_length_184_cov_1.133333_g33879_i0 PRJNA758398 34020 184 1.133333 2.08533272 Pyrococcus sp. NA2 342949 Archaea Archaea 52.8 0.016   NTclustered gi|331033106|gb|CP002670.1| 342949 g33879 i0 100 0.152173913043478 28 0 15 0 144 171 1081645 1081672 Pyrococcus sp. NA2, complete genome blastn 28 52.8 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus sp. NA2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;