RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA758398" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA758398 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7118618 7118618 PRJNA758398_S_NODE_3606_length_498_cov_18.886414_g3465_i0 PRJNA758398 3606 498 18.886414 94.05434172 Cetobacterium somerae 188913 Bacteria Bacteria 874 0   NTclustered gi|2666488225|gb|CP143319.1| 188913 g3465 i0 98.394 531.522088353414 498 7 100 1 1 498 1318946 1318450 Cetobacterium somerae strain ceto chromosome, complete genome blastn 264698 874 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
8392981 8392981 PRJNA758398_S_NODE_27867_length_200_cov_1.013245_g27726_i0 PRJNA758398 27867 200 1.013245 2.02649 Pseudoleptotrichia goodfellowii 157692 Bacteria Bacteria 82.4 2.22e-11   NTclustered gi|1708563796|dbj|AP019822.1| 157692 g27726 i0 76.821 2.855 151 31 74 4 6 153 1434099 1434248 Leptotrichia goodfellowii JCM16774 DNA, complete genome blastn 571 82.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Pseudoleptotrichia Pseudoleptotrichia goodfellowii
12219536 12219536 PRJNA758398_S_NODE_41530_length_168_cov_1.260504_g41389_i0 PRJNA758398 41530 168 1.260504 2.11764672 Cetobacterium somerae 188913 Bacteria Bacteria 180 6.2e-41   NTclustered gi|2201062197|gb|CP092519.1| 188913 g41389 i0 86.31 5 168 20 100 3 1 168 1561641 1561805 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 840 180 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
21606565 21606565 PRJNA758398_S_NODE_46737_length_165_cov_0.879310_g46596_i0 PRJNA758398 46737 165 0.87931 1.4508615 Cetobacterium 180162 Bacteria Bacteria 289 9.66e-74   NTclustered gi|2666488225|gb|CP143319.1| 188913 g46596 i0 98.182 8.05454545454545 165 3 100 0 1 165 1906827 1906991 Cetobacterium somerae strain ceto chromosome, complete genome blastn 1329 289 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;