RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA758398" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 16 ✖

bioproject 1

  • PRJNA758398 · 16 ✖

analysis 1

  • blastn · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
739485 739485 PRJNA758398_S_NODE_13861_length_265_cov_1.083333_g13720_i0 PRJNA758398 13861 265 1.083333 2.87083245 Trebouxia sp. A1-2 2608996 Plants Plants 100 8.53e-17   NTclustered gi|1825511251|gb|MN642622.1| 2608996 g13720 i0 89.024 2.52830188679245 82 8 31 1 53 133 86210 86129 Trebouxia sp. A1-2 mitochondrion, complete genome blastn 670 100 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. A1-2
739681 739681 PRJNA758398_S_NODE_2861_length_556_cov_1.765286_g2725_i0 PRJNA758398 2861 556 1.765286 9.81499016 Chlamydomonas reinhardtii 3055 Plants Plants 370 1.33e-97   NTclustered gi|2082248650|ref|XM_043063418.1| 3055 g2725 i0 79.099 85.0647482014388 555 102 99 13 1 548 834 287 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g290950v5), mRNA blastn 47296 370 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
2015903 2015903 PRJNA758398_S_NODE_40622_length_169_cov_2.975000_g40481_i0 PRJNA758398 40622 169 2.975 5.02775 Prototheca blaschkeae 328666 Plants Plants 148 1.75e-31   NTclustered gi|1159431138|gb|KX389282.1| 328666 g40481 i0 94.737 55.3431952662722 95 5 56 0 1 95 192 98 Prototheca blaschkeae isolate SAG-2064 alpha tubulin (TUA1) mRNA, complete cds blastn 9353 148 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca blaschkeae
4568356 4568356 PRJNA758398_S_NODE_54864_length_160_cov_2.108108_g54723_i0 PRJNA758398 54864 160 2.108108 3.3729728 Chlorella variabilis 554065 Plants Plants 246 5.67e-61   NTclustered gi|552844675|ref|XM_005851082.1| 554065 g54723 i0 94.375 98.89375 160 9 100 0 1 160 350 191 Chlorella variabilis alpha-tubulin (CHLNCDRAFT_33793) mRNA, complete cds blastn 15823 246 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
5843440 5843440 PRJNA758398_S_NODE_46165_length_165_cov_0.879310_g46024_i0 PRJNA758398 46165 165 0.87931 1.4508615 Monoraphidium neglectum 145388 Plants Plants 126 8.02e-25   NTclustered gi|926777351|ref|XM_014041696.1| 145388 g46024 i0 89.899 11.6787878787879 99 8 59 2 51 148 191 94 Monoraphidium neglectum 60S ribosomal protein L38 mRNA blastn 1927 126 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
8392748 8392748 PRJNA758398_S_NODE_10427_length_300_cov_2.466135_g10286_i0 PRJNA758398 10427 300 2.466135 7.398405 Chlorella variabilis 554065 Plants Plants 148 3.4599999999999996e-31   NTclustered gi|552841639|ref|XM_005850301.1| 554065 g10286 i0 79.343 2.00666666666667 213 42 71 2 62 273 485 274 Chlorella variabilis hypothetical protein (CHLNCDRAFT_59600) mRNA, complete cds blastn 602 148 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
8393031 8393031 PRJNA758398_S_NODE_32247_length_188_cov_1.417266_g32106_i0 PRJNA758398 32247 188 1.417266 2.66446008 Chlamydomonas reinhardtii 3055 Plants Plants 121 4.3499999999999997e-23   NTclustered gi|2082260551|ref|XM_001702928.2| 3055 g32106 i0 87.619 4.03191489361702 105 11 55 2 15 118 247 144 Chlamydomonas reinhardtii ribosomal protein S11 (CHLRE_12g514500v5), mRNA blastn 758 121 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
10133013 10133013 PRJNA758398_S_NODE_17508_length_239_cov_3.057895_g17367_i0 PRJNA758398 17508 239 3.057895 7.30836905 Eukaryota 2759 Plants Plants 331 2.46e-86   NTclustered gi|760442684|ref|XM_011400109.1| 3075 g17367 i0 91.632 98.2092050209205 239 20 100 0 1 239 324 562 Auxenochlorella protothecoides Tubulin alpha chain partial mRNA blastn 23472 331 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
10943665 10943665 PRJNA758398_S_NODE_17409_length_240_cov_1.429319_g17268_i0 PRJNA758398 17409 240 1.429319 3.4303656 Coccomyxa subellipsoidea 248742 Plants Plants 132 2.7e-26   NTclustered gi|545354978|ref|XM_005643253.1| 574566 g17268 i0 87.179 34.2875 117 13 48 2 18 133 270 155 Coccomyxa subellipsoidea C-169 ribosomal protein S11 component of cytosolic 80S ribosome and 40S small subunit mRNA blastn 8229 132 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
19866587 19866587 PRJNA758398_S_NODE_27496_length_201_cov_1.006579_g27355_i0 PRJNA758398 27496 201 1.006579 2.02322379 Coccomyxa subellipsoidea 248742 Plants Plants 89.8 1.33e-13   NTclustered gi|545354978|ref|XM_005643253.1| 574566 g27355 i0 87.179 24.2437810945274 78 10 39 0 61 138 241 164 Coccomyxa subellipsoidea C-169 ribosomal protein S11 component of cytosolic 80S ribosome and 40S small subunit mRNA blastn 4873 89.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
19866875 19866875 PRJNA758398_S_NODE_51796_length_162_cov_0.902655_g51655_i0 PRJNA758398 51796 162 0.902655 1.4623011 Chlorella variabilis 554065 Plants Plants 60.2 8.06e-5   NTclustered gi|552833102|ref|XM_005848420.1| 554065 g51655 i0 90.909 0.271604938271605 44 4 27 0 92 135 1234 1191 Chlorella variabilis hypothetical protein (CHLNCDRAFT_57621) mRNA, complete cds blastn 44 60.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
20330813 20330813 PRJNA758398_S_NODE_2156_length_628_cov_3.901554_g2026_i0 PRJNA758398 2156 628 3.901554 24.50175912 Eukaryota 2759 Plants Plants 58.4 0.001   NTclustered gi|2089724583|gb|MZ446957.1| 78182 g2026 i0 100 2.38057324840764 31 0 5 0 101 131 1384 1414 Vitreochlamys ordinata strain NIES-882 pumilio family protein mRNA, partial cds blastn 1495 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Vitreochlamys Vitreochlamys ordinata
21142210 21142210 PRJNA758398_S_NODE_2437_length_595_cov_2.016484_g2305_i0 PRJNA758398 2437 595 2.016484 11.9980798 Chlamydomonas incerta 51695 Plants Plants 453 1.38e-122   NTclustered gi|74272606|gb|DQ122868.1| 51695 g2305 i0 84.683 86.0621848739496 457 66 76 4 53 507 34 488 Chlamydomonas incerta 40S ribosomal protein S3 mRNA, complete cds blastn 51207 453 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
22417146 22417146 PRJNA758398_S_NODE_33158_length_186_cov_1.116788_g33017_i0 PRJNA758398 33158 186 1.116788 2.07722568 Chlorella sp. ArM0029B 1415603 Plants Plants 73.1 1.22e-8   NTclustered gi|1432229018|gb|MG669273.1| 1415603 g33017 i0 90.741 0.290322580645161 54 5 29 0 103 156 657 710 Chlorella sp. ArM0029B RHP1 protein mRNA, complete cds blastn 54 73.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp. ArM0029B
23692440 23692440 PRJNA758398_S_NODE_1279_length_794_cov_2.761074_g1178_i0 PRJNA758398 1279 794 2.761074 21.92292756 Chlamydomonas reinhardtii 3055 Plants Plants 390 1.49e-103   NTclustered gi|2082259086|ref|XM_001697336.2| 3055 g1178 i0 84.557 49.1523929471033 395 59 50 2 290 683 515 122 Chlamydomonas reinhardtii ribosomal protein S14 (CHLRE_11g480150v5), mRNA blastn 39027 390 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
23692828 23692828 PRJNA758398_S_NODE_42339_length_167_cov_0.864407_g42198_i0 PRJNA758398 42339 167 0.864407 1.44355969 Monoraphidium neglectum 145388 Plants Plants 87.9 3.84e-13   NTclustered gi|926788852|ref|XM_014047446.1| 145388 g42198 i0 79.508 0.730538922155689 122 25 73 0 45 166 700 821 Monoraphidium neglectum putative 60S ribosomal protein L13 mRNA blastn 122 87.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;