RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

29 rows where analysis = "blastn", bioproject = "PRJNA758088" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 29 ✖

tax_phylum 1

tax_kingdom 1

bioproject 1

  • PRJNA758088 · 29 ✖

analysis 1

  • blastn · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2012065 2012065 PRJNA758088_P_NODE_231602_length_280_cov_1.115942_g224631_i0 PRJNA758088 231602 280 1.115942 3.1246376 Methanobrevibacter smithii 2173 Archaea Archaea 518 2.12e-142   NTclustered gi|1294447101|gb|CP017803.1| 2173 g224631 i0 100 6.99642857142857 280 0 100 0 1 280 1472708 1472429 Methanobrevibacter smithii strain KB11 chromosome, complete genome blastn 1959 518 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
2013904 2013904 PRJNA758088_P_NODE_356462_length_242_cov_0.911243_g349491_i0 PRJNA758088 356462 242 0.911243 2.20520806 Methanobrevibacter smithii 2173 Archaea Archaea 448 2.3799999999999995e-121   NTclustered gi|2188913606|dbj|AP025587.1| 2173 g349491 i0 100 7 242 0 100 0 1 242 1019200 1018959 Methanobrevibacter smithii CE91-St68 DNA, complete genome blastn 1694 448 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
3755432 3755432 PRJNA758088_P_NODE_306023_length_248_cov_0.880000_g299052_i0 PRJNA758088 306023 248 0.88 2.1824 Methanoregula 395331 Archaea Archaea 459 1.13e-124   NTclustered gi|432136161|gb|CP003167.1| 593750 g299052 i0 100 113.229838709677 248 0 100 0 1 248 548781 549028 Methanoregula formicica SMSP, complete genome blastn 28081 459 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula formicica
5032091 5032091 PRJNA758088_P_NODE_342584_length_244_cov_0.900585_g335613_i0 PRJNA758088 342584 244 0.900585 2.1974274 Methanothrix 2222 Archaea Archaea 296 9.21e-76   NTclustered gi|2133328945|gb|CP086219.1| 90426 g335613 i0 92.019 3.68852459016393 213 14 86 2 1 211 416226 416437 MAG: Methanothrix sp. isolate MAG 281 chromosome blastn 900 296 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
5840801 5840801 PRJNA758088_P_NODE_315205_length_247_cov_0.885057_g308234_i0 PRJNA758088 315205 247 0.885057 2.18609079 Methanobrevibacter smithii 2173 Archaea Archaea 448 2.4399999999999993e-121   NTclustered gi|1294447101|gb|CP017803.1| 2173 g308234 i0 99.592 6.94331983805668 245 1 99 0 3 247 588222 588466 Methanobrevibacter smithii strain KB11 chromosome, complete genome blastn 1715 448 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
6307819 6307819 PRJNA758088_P_NODE_323425_length_246_cov_0.890173_g316454_i0 PRJNA758088 323425 246 0.890173 2.18982558 Methanobrevibacter 2172 Archaea Archaea 444 3.14e-120   NTclustered gi|2188913606|dbj|AP025587.1| 2173 g316454 i0 99.187 6 246 2 100 0 1 246 9950 10195 Methanobrevibacter smithii CE91-St68 DNA, complete genome blastn 1476 444 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
7116224 7116224 PRJNA758088_P_NODE_328246_length_245_cov_1.331395_g321275_i0 PRJNA758088 328246 245 1.331395 3.26191775 Methanothrix sp. 90426 Archaea Archaea 409 1.1399999999999998e-109   NTclustered gi|2626216449|emb|OY821645.1| 90426 g321275 i0 96.748 25.5183673469388 246 6 100 2 1 245 826893 827137 MAG: Methanothrix sp. isolate d1628e35-7b52-4540-a147-c2ca1342adce genome assembly, chromosome: 1 blastn 6252 409 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
7116649 7116649 PRJNA758088_P_NODE_355686_length_242_cov_0.911243_g348715_i0 PRJNA758088 355686 242 0.911243 2.20520806 Methanobrevibacter smithii 2173 Archaea Archaea 442 1.1099999999999995e-119   NTclustered gi|2188913606|dbj|AP025587.1| 2173 g348715 i0 99.587 6.97933884297521 242 1 100 0 1 242 910922 910681 Methanobrevibacter smithii CE91-St68 DNA, complete genome blastn 1689 442 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
8389244 8389244 PRJNA758088_P_NODE_224267_length_284_cov_2.075829_g217296_i0 PRJNA758088 224267 284 2.075829 5.89535436 Methanosarcina horonobensis 418008 Archaea Archaea 486 6.069999999999999e-133   NTclustered gi|805380606|gb|CP009516.1| 1434110 g217296 i0 97.865 196.334507042254 281 6 99 0 4 284 47831 48111 Methanosarcina horonobensis HB-1, complete genome blastn 55759 486 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina horonobensis
8390033 8390033 PRJNA758088_P_NODE_280287_length_251_cov_1.106742_g273316_i0 PRJNA758088 280287 251 1.106742 2.77792242 Methanobrevibacter smithii 2173 Archaea Archaea 459 1.1499999999999996e-124   NTclustered gi|2791693311|gb|CP144200.1| 2173 g273316 i0 99.602 7.17131474103586 251 1 100 0 1 251 885003 884753 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 1800 459 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
8391026 8391026 PRJNA758088_P_NODE_345727_length_243_cov_0.905882_g338756_i0 PRJNA758088 345727 243 0.905882 2.20129326 uncultured Methanoregula sp. 1005933 Archaea Archaea 147 9.77e-31   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g338756 i0 80.978 0.757201646090535 184 35 76 0 60 243 1153198 1153015 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 184 147 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
8857266 8857266 PRJNA758088_P_NODE_94387_length_433_cov_1.261111_g87417_i0 PRJNA758088 94387 433 1.261111 5.46061063 Methanobrevibacter 2172 Archaea Archaea 800 0   NTclustered gi|2791693311|gb|CP144200.1| 2173 g87417 i0 100 9.98845265588915 433 0 100 0 1 433 1684911 1684479 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 4325 800 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
9663652 9663652 PRJNA758088_P_NODE_171208_length_324_cov_1.135458_g164237_i0 PRJNA758088 171208 324 1.135458 3.67888392 Methanothrix sp. 90426 Archaea Archaea 588 1.88e-163   NTclustered gi|2626216449|emb|OY821645.1| 90426 g164237 i0 99.383 232.04012345679 324 2 100 0 1 324 826179 825856 MAG: Methanothrix sp. isolate d1628e35-7b52-4540-a147-c2ca1342adce genome assembly, chromosome: 1 blastn 75181 588 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
9665724 9665724 PRJNA758088_P_NODE_315188_length_247_cov_0.885057_g308217_i0 PRJNA758088 315188 247 0.885057 2.18609079 Methanobrevibacter smithii 2173 Archaea Archaea 457 4.05e-124   NTclustered gi|2188913606|dbj|AP025587.1| 2173 g308217 i0 100 8.24696356275304 247 0 100 0 1 247 1778980 1778734 Methanobrevibacter smithii CE91-St68 DNA, complete genome blastn 2037 457 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
10132408 10132408 PRJNA758088_P_NODE_314288_length_247_cov_0.885057_g307317_i0 PRJNA758088 314288 247 0.885057 2.18609079 Methanococcus 2184 Archaea Archaea 457 4.05e-124   NTclustered gi|2891706660|gb|CP178162.1| 39152 g307317 i0 100 8.98380566801619 247 0 100 0 1 247 644024 644270 Methanococcus maripaludis strain LL chromosome, complete genome blastn 2219 457 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis
12214871 12214871 PRJNA758088_P_NODE_182070_length_315_cov_0.896694_g175099_i0 PRJNA758088 182070 315 0.896694 2.8245861 Methanobrevibacter smithii 2173 Archaea Archaea 582 8.459999999999998e-162   NTclustered gi|1294447101|gb|CP017803.1| 2173 g175099 i0 100 1 315 0 100 0 1 315 274779 274465 Methanobrevibacter smithii strain KB11 chromosome, complete genome blastn 315 582 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
12215338 12215338 PRJNA758088_P_NODE_212730_length_292_cov_1.127854_g205759_i0 PRJNA758088 212730 292 1.127854 3.29333368 Methanobrevibacter smithii 2173 Archaea Archaea 529 1.0299999999999996e-145   NTclustered gi|2188913606|dbj|AP025587.1| 2173 g205759 i0 99.315 2 292 2 100 0 1 292 1366363 1366654 Methanobrevibacter smithii CE91-St68 DNA, complete genome blastn 584 529 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
12216946 12216946 PRJNA758088_P_NODE_318770_length_247_cov_0.873563_g311799_i0 PRJNA758088 318770 247 0.873563 2.15770061 Methanoregula formicica 882104 Archaea Archaea 329 9.21e-86   NTclustered gi|432136161|gb|CP003167.1| 593750 g311799 i0 90.688 9.95141700404858 247 23 100 0 1 247 2798639 2798885 Methanoregula formicica SMSP, complete genome blastn 2458 329 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula formicica
12216999 12216999 PRJNA758088_P_NODE_321550_length_246_cov_0.890173_g314579_i0 PRJNA758088 321550 246 0.890173 2.18982558 Methanobrevibacter smithii 2173 Archaea Archaea 455 1.4500000000000002e-123   NTclustered gi|2188913606|dbj|AP025587.1| 2173 g314579 i0 100 7.98373983739837 246 0 100 0 1 246 421492 421247 Methanobrevibacter smithii CE91-St68 DNA, complete genome blastn 1964 455 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
13490758 13490758 PRJNA758088_P_NODE_294431_length_250_cov_0.870056_g287460_i0 PRJNA758088 294431 250 0.870056 2.17514 Methanobrevibacter smithii 2173 Archaea Archaea 353 5.54e-93   NTclustered gi|2791693311|gb|CP144200.1| 2173 g287460 i0 92.339 5.92 248 19 99 0 3 250 1774562 1774809 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 1480 353 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
16039591 16039591 PRJNA758088_P_NODE_292153_length_250_cov_0.870056_g285182_i0 PRJNA758088 292153 250 0.870056 2.17514 Methanobrevibacter smithii 2173 Archaea Archaea 462 8.83e-126   NTclustered gi|148551077|gb|CP000678.1| 420247 g285182 i0 100 7 250 0 100 0 1 250 356734 356983 Methanobrevibacter smithii ATCC 35061, complete genome blastn 1750 462 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
16040683 16040683 PRJNA758088_P_NODE_364253_length_241_cov_0.916667_g357282_i0 PRJNA758088 364253 241 0.916667 2.20916747 Methanobrevibacter smithii 2173 Archaea Archaea 446 8.519999999999999e-121   NTclustered gi|2188913606|dbj|AP025587.1| 2173 g357282 i0 100 4.98755186721992 241 0 100 0 1 241 736443 736203 Methanobrevibacter smithii CE91-St68 DNA, complete genome blastn 1202 446 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
16506547 16506547 PRJNA758088_P_NODE_292933_length_250_cov_0.870056_g285962_i0 PRJNA758088 292933 250 0.870056 2.17514 Methanobrevibacter 2172 Archaea Archaea 462 8.83e-126   NTclustered gi|2791693311|gb|CP144200.1| 2173 g285962 i0 100 11.216 250 0 100 0 1 250 385136 384887 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 2804 462 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
16506729 16506729 PRJNA758088_P_NODE_347073_length_243_cov_0.905882_g340102_i0 PRJNA758088 347073 243 0.905882 2.20129326 Methanothrix 2222 Archaea Archaea 438 1.4399999999999996e-118   NTclustered gi|2133328945|gb|CP086219.1| 90426 g340102 i0 99.177 3.88477366255144 243 2 100 0 1 243 781951 782193 MAG: Methanothrix sp. isolate MAG 281 chromosome blastn 944 438 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
18586010 18586010 PRJNA758088_P_NODE_110215_length_399_cov_1.417178_g103245_i0 PRJNA758088 110215 399 1.417178 5.65454022 Methanobrevibacter smithii 2173 Archaea Archaea 732 0   NTclustered gi|2188913606|dbj|AP025587.1| 2173 g103245 i0 99.749 7 399 1 100 0 1 399 1581846 1581448 Methanobrevibacter smithii CE91-St68 DNA, complete genome blastn 2793 732 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
19055503 19055503 PRJNA758088_P_NODE_317415_length_247_cov_0.885057_g310444_i0 PRJNA758088 317415 247 0.885057 2.18609079 Methanobrevibacter 2172 Archaea Archaea 451 1.88e-122   NTclustered gi|2791693311|gb|CP144200.1| 2173 g310444 i0 99.595 7 247 1 100 0 1 247 38934 39180 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 1729 451 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
21606065 21606065 PRJNA758088_P_NODE_355157_length_242_cov_0.911243_g348186_i0 PRJNA758088 355157 242 0.911243 2.20520806 Methanobrevibacter 2172 Archaea Archaea 448 2.3799999999999995e-121   NTclustered gi|2188913606|dbj|AP025587.1| 2173 g348186 i0 100 7.34710743801653 242 0 100 0 1 242 419514 419755 Methanobrevibacter smithii CE91-St68 DNA, complete genome blastn 1778 448 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
22881104 22881104 PRJNA758088_P_NODE_24798_length_987_cov_2.513129_g19738_i0 PRJNA758088 24798 987 2.513129 24.80458323 Methanoregula 395331 Archaea Archaea 1659 0   NTclustered gi|432136161|gb|CP003167.1| 593750 g19738 i0 96.967 210.716312056738 989 28 100 2 1 987 547170 548158 Methanoregula formicica SMSP, complete genome blastn 207977 1659 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula formicica
24154767 24154767 PRJNA758088_P_NODE_155239_length_339_cov_0.868421_g148268_i0 PRJNA758088 155239 339 0.868421 2.94394719 Methanobrevibacter 2172 Archaea Archaea 627 4.1799999999999996e-175   NTclustered gi|2791693311|gb|CP144200.1| 2173 g148268 i0 100 8.84660766961652 339 0 100 0 1 339 591825 591487 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 2999 627 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;