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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA758088" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA758088 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3288942 3288942 PRJNA758088_P_NODE_338703_length_244_cov_0.900585_g331732_i0 PRJNA758088 338703 244 0.900585 2.1974274 Phytophthora capsici 4784 SAR_Eukaryotes SAR_Eukaryotes 228 3.409999999999999e-55   NTclustered gi|189084149|gb|BT031665.1| 4784 g331732 i0 84.848 51.6188524590164 231 29 93 6 16 243 1261 1034 Phytophthora capsici clone CBOT53-I08 mRNA sequence blastn 12595 228 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
7113856 7113856 PRJNA758088_P_NODE_168846_length_326_cov_1.209486_g161875_i0 PRJNA758088 168846 326 1.209486 3.94292436 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.009   NTclustered gi|2794890102|ref|XM_067886897.1| 164328 g161875 i0 88.889 0.138036809815951 45 4 14 1 217 261 872 829 Phytophthora ramorum Ornithine decarboxylase 1 (KRP23_2194), partial mRNA blastn 45 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
8856827 8856827 PRJNA758088_P_NODE_324607_length_246_cov_0.890173_g317636_i0 PRJNA758088 324607 246 0.890173 2.18982558 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 202 2.08e-47   NTclustered gi|227811062|gb|FJ801890.1| 109152 g317636 i0 93.431 58.979674796748 137 7 56 1 110 246 140 274 Phytophthora boehmeriae clone WPC3963A1666 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence blastn 14509 202 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora boehmeriae
9663941 9663941 PRJNA758088_P_NODE_190528_length_308_cov_1.195745_g183557_i0 PRJNA758088 190528 308 1.195745 3.6828946 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 244 4.4199999999999996e-60   NTclustered gi|2794920544|ref|XM_067895675.1| 164328 g183557 i0 82.909 16.3831168831169 275 43 89 3 4 276 735 1007 Phytophthora ramorum Mitochondrial phosphate carrier protein 3, mitochondrial (KRP23_10041), partial mRNA blastn 5046 244 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
15231551 15231551 PRJNA758088_P_NODE_129512_length_369_cov_1.314189_g122541_i0 PRJNA758088 129512 369 1.314189 4.84935741 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 211 5.47e-50   NTclustered gi|2248513842|ref|NC_063815.1| 907947 g122541 i0 82.979 63.6016260162602 235 38 63 2 136 369 46007 45774 Phytopythium vexans culture CBS:119.80 mitochondrion, complete genome blastn 23469 211 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Phytopythium Phytopythium vexans
16039261 16039261 PRJNA758088_P_NODE_269953_length_257_cov_1.103261_g262982_i0 PRJNA758088 269953 257 1.103261 2.83538077 Phytophthora versiformis 1833877 SAR_Eukaryotes SAR_Eukaryotes 228 3.6199999999999984e-55   NTclustered gi|1710471323|gb|MK864060.1| 1833877 g262982 i0 82.946 62.0739299610895 258 38 99 5 2 256 221 475 Phytophthora versiformis strain CPHST BL 189 translation elongation factor 1-alpha (EF1a) gene, partial cds blastn 15953 228 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora versiformis
21141630 21141630 PRJNA758088_P_NODE_80397_length_473_cov_1.357500_g73432_i0 PRJNA758088 80397 473 1.3575 6.420975 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 281 5.39e-71   NTclustered gi|813142527|ref|XM_012343931.1| 695850 g73432 i0 78.224 16.6871035940803 473 80 97 22 13 472 690 228 Saprolegnia parasitica CBS 223.65 60S ribosomal protein L3 mRNA blastn 7893 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
22415831 22415831 PRJNA758088_P_NODE_51278_length_620_cov_1.062157_g44540_i0 PRJNA758088 51278 620 1.062157 6.5853734 Phytophthora sp. ML-2023a 3044284 SAR_Eukaryotes SAR_Eukaryotes 231 7.359999999999998e-56   NTclustered gi|2500404807|gb|OQ735416.1| 3044284 g44540 i0 79.096 42.6903225806452 354 60 55 9 102 442 22315 21963 Phytophthora sp. ML-2023a voucher AM18FRL12 mitochondrion, complete genome blastn 26468 231 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sp. ML-2023a

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;