RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA758088" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA758088 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2010645 2010645 PRJNA758088_P_NODE_138622_length_357_cov_1.507042_g131651_i0 PRJNA758088 138622 357 1.507042 5.38013994 Heterostelium pallidum 13642 Evosea other_Eukaryota 135 3.2600000000000004e-27   NTclustered gi|60117108|ref|NC_006862.1| 13642 g131651 i0 76.066 8.42296918767507 305 48 80 23 31 317 177 474 Polysphondylium pallidum mitochondrion, complete genome blastn 3007 135 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium pallidum
17313923 17313923 PRJNA758088_P_NODE_215294_length_290_cov_1.419355_g208323_i0 PRJNA758088 215294 290 1.419355 4.1161295 Acytostelium leptosomum 133408 Evosea other_Eukaryota 503 6.17e-138   NTclustered gi|1057487862|gb|KX539491.1| 133408 g208323 i0 97.931 109.71724137931 290 6 100 0 1 290 2936 2647 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 31818 503 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
19864521 19864521 PRJNA758088_P_NODE_335796_length_244_cov_1.497076_g328825_i0 PRJNA758088 335796 244 1.497076 3.65286544 Acytostelium leptosomum 133408 Evosea other_Eukaryota 435 1.87e-117   NTclustered gi|1057487862|gb|KX539491.1| 133408 g328825 i0 98.77 102.27868852459 244 3 100 0 1 244 3193 2950 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 24956 435 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
21139721 21139721 PRJNA758088_P_NODE_307277_length_248_cov_0.880000_g300306_i0 PRJNA758088 307277 248 0.88 2.1824 Acytostelium subglobosum 361139 Evosea other_Eukaryota 87.9 6.15e-13   NTclustered gi|831761070|ref|XM_012894692.1| 1410327 g300306 i0 94.737 3.01209677419355 57 1 23 2 17 73 343 397 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 747 87.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;