RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA758088" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA758088 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4564711 4564711 PRJNA758088_P_NODE_247644_length_270_cov_1.263959_g240673_i0 PRJNA758088 247644 270 1.263959 3.4126893 Vannella septentrionalis 197531 Discosea other_Eukaryota 357 4.6799999999999997e-94   NTclustered gi|300078499|gb|GU001161.1| 197531 g240673 i0 98.068 34.6962962962963 207 1 100 1 1 204 2663 2869 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9368 357 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
7116430 7116430 PRJNA758088_P_NODE_340386_length_244_cov_0.900585_g333415_i0 PRJNA758088 340386 244 0.900585 2.1974274 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 429 8.699999999999998e-116   NTclustered gi|470527052|ref|XM_004356913.1| 1257118 g333415 i0 98.361 2.29098360655738 244 4 100 0 1 244 459 216 Acanthamoeba castellanii str. Neff ubiquitin-conjugating enzyme, putative (ACA1_321320), partial mRNA blastn 559 429 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9665990 9665990 PRJNA758088_P_NODE_332708_length_245_cov_0.895349_g325737_i0 PRJNA758088 332708 245 0.895349 2.19360505 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 171 5.85e-38   NTclustered gi|470455615|ref|XM_004340928.1| 1257118 g325737 i0 84.795 62.0448979591837 171 24 69 2 75 244 109 278 Acanthamoeba castellanii str. Neff ribosomal protein S23 (S12), putative (ACA1_232480), partial mRNA blastn 15201 171 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12217093 12217093 PRJNA758088_P_NODE_328370_length_245_cov_1.250000_g321399_i0 PRJNA758088 328370 245 1.25 3.0625 Vannella sp. strain 4354/I 325074 Discosea other_Eukaryota 453 5.1900000000000006e-123   NTclustered gi|62865936|gb|AY929911.1| 325074 g321399 i0 100 98.3020408163265 245 0 100 0 1 245 155 399 Vannella sp. strain 4354/I 18S small subunit ribosomal RNA gene, partial sequence blastn 24084 453 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain 4354/I
16040058 16040058 PRJNA758088_P_NODE_321973_length_246_cov_0.890173_g315002_i0 PRJNA758088 321973 246 0.890173 2.18982558 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 307 4.2900000000000005e-79   NTclustered gi|470493585|ref|XM_004346477.1| 1257118 g315002 i0 89.344 0.991869918699187 244 26 99 0 1 244 142 385 Acanthamoeba castellanii str. Neff PhoPQactivated pathogenicity-related protein-like protein, putative (ACA1_227830), partial mRNA blastn 244 307 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16041973 16041973 PRJNA758088_P_NODE_96233_length_428_cov_1.743662_g89263_i0 PRJNA758088 96233 428 1.743662 7.46287336 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 536 9.349999999999999e-148   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g89263 i0 95.322 35.446261682243 342 9 96 7 1 336 344 4 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 15171 536 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;