RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA758088" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA758088 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2015140 2015140 PRJNA758088_P_NODE_83062_length_464_cov_1.792839_g76093_i0 PRJNA758088 83062 464 1.792839 8.31877296 Dendrochytridium crassum 1352835 Fungi Fungi 195 7.079999999999999e-45   NTclustered gi|82398285|gb|DQ273785.1| 1352835 g76093 i0 88.485 27.1099137931034 165 14 35 5 236 398 1848 2009 Dendrochytridium crassum isolate AFTOL-ID 41 28S ribosomal RNA gene, partial sequence blastn 12579 195 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Dendrochytridium Dendrochytridium crassum
2015345 2015345 PRJNA758088_P_NODE_93722_length_434_cov_7.562327_g86752_i0 PRJNA758088 93722 434 7.562327 32.82049918 Gromochytrium mamkaevae 1486924 Fungi Fungi 268 3.82e-67   NTclustered gi|612507318|gb|KF586842.1| 1486924 g86752 i0 87.879 53.5207373271889 231 25 53 3 1 229 5640 5411 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 23228 268 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
7113049 7113049 PRJNA758088_P_NODE_114766_length_391_cov_1.509434_g107796_i0 PRJNA758088 114766 391 1.509434 5.90188694 Polychytrium aggregatum 110093 Fungi Fungi 195 5.87e-45   NTclustered gi|2432132411|ref|XM_053109501.1| 110093 g107796 i0 85.185 37.2480818414322 189 28 48 0 202 390 904 716 Polychytrium aggregatum ribosomal protein L3-domain-containing protein (BJ171DRAFT_489537), mRNA blastn 14564 195 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
8392552 8392552 PRJNA758088_P_NODE_91167_length_441_cov_1.554348_g84197_i0 PRJNA758088 91167 441 1.554348 6.85467468 Polychytrium aggregatum 110093 Fungi Fungi 62.1 7.09e-5   NTclustered gi|2432145138|ref|XM_053110794.1| 110093 g84197 i0 100 0.192743764172336 33 0 7 0 407 439 559 527 Polychytrium aggregatum P-loop containing nucleoside triphosphate hydrolase protein (BJ171DRAFT_502800), mRNA blastn 85 62.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
13491557 13491557 PRJNA758088_P_NODE_347011_length_243_cov_0.905882_g340040_i0 PRJNA758088 347011 243 0.905882 2.20129326 Polychytrium aggregatum 110093 Fungi Fungi 171 5.8e-38   NTclustered gi|2432155310|ref|XM_053111519.1| 110093 g340040 i0 79.832 3.87242798353909 238 44 97 4 8 243 156 391 Polychytrium aggregatum 60S ribosomal protein L23 (BJ171DRAFT_510921), mRNA blastn 941 171 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
17313294 17313294 PRJNA758088_P_NODE_173774_length_322_cov_0.779116_g166803_i0 PRJNA758088 173774 322 0.779116 2.50875352 Polychytrium aggregatum 110093 Fungi Fungi 86.1 2.98e-12   NTclustered gi|2432130344|ref|XM_053109098.1| 110093 g166803 i0 90.625 1.54037267080745 64 6 20 0 2 65 305 368 Polychytrium aggregatum uncharacterized protein (BJ171DRAFT_485234), mRNA blastn 496 86.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
24964316 24964316 PRJNA758088_P_NODE_348740_length_243_cov_0.905882_g341769_i0 PRJNA758088 348740 243 0.905882 2.20129326 Spizellomyces punctatus 109760 Fungi Fungi 115 2.7500000000000003e-21   NTclustered gi|1027005164|ref|XM_016754649.1| 645134 g341769 i0 93.506 7.52674897119342 77 5 32 0 1 77 333 257 Spizellomyces punctatus DAOM BR117 60S ribosomal protein L44 (SPPG_06444), mRNA blastn 1829 115 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;