RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA758088" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA758088 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1203685 1203685 PRJNA758088_P_NODE_309501_length_248_cov_0.880000_g302530_i0 PRJNA758088 309501 248 0.88 2.1824 Herpetosiphon 64 Bacteria Bacteria 363 9.119999999999997e-96   NTclustered gi|470482680|ref|NR_076546.1| 65 g302530 i0 93.496 5.91532258064516 246 12 98 4 5 248 1403 1646 Herpetosiphon aurantiacus strain DSM 785 23S ribosomal RNA gene, complete sequence blastn 1467 363 1 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus
3754763 3754763 PRJNA758088_P_NODE_143783_length_351_cov_1.107914_g136812_i0 PRJNA758088 143783 351 1.107914 3.88877814 Chloroflexus 1107 Bacteria Bacteria 139 2.47e-28   NTclustered gi|470482818|ref|NR_076553.1| 1108 g136812 i0 91.919 13.2535612535613 99 8 28 0 1 99 552 454 Chloroflexus aurantiacus strain J-10-fl 23S ribosomal RNA gene, complete sequence blastn 4652 139 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Chloroflexaceae Chloroflexus Chloroflexus aurantiacus
7581081 7581081 PRJNA758088_P_NODE_166186_length_328_cov_1.509804_g159215_i0 PRJNA758088 166186 328 1.509804 4.95215712 Chloroflexus 1107 Bacteria Bacteria 289 2.16e-73   NTclustered gi|470482818|ref|NR_076553.1| 1108 g159215 i0 84.244 277.219512195122 311 34 93 13 19 323 721 1022 Chloroflexus aurantiacus strain J-10-fl 23S ribosomal RNA gene, complete sequence blastn 90928 289 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Chloroflexaceae Chloroflexus Chloroflexus aurantiacus
23690005 23690005 PRJNA758088_P_NODE_299139_length_249_cov_0.875000_g292168_i0 PRJNA758088 299139 249 0.875 2.17875 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 200 7.61e-47   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g292168 i0 81.6 2.98393574297189 250 39 99 6 1 246 7394086 7394332 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 743 200 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;