RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA758088" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA758088 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2013900 2013900 PRJNA758088_P_NODE_356042_length_242_cov_0.911243_g349071_i0 PRJNA758088 356042 242 0.911243 2.20520806 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 414 2.41e-111   NTclustered gi|31789464|gb|AY281356.1| 171953 g349071 i0 97.521 99.7479338842975 242 6 100 0 1 242 11460 11219 Uncultured Acidobacteria bacterium clone 41b15 genomic sequence blastn 24139 414 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
14764544 14764544 PRJNA758088_P_NODE_201932_length_299_cov_1.792035_g194961_i0 PRJNA758088 201932 299 1.792035 5.35818465 Edaphobacter paludis 3035702 Bacteria Bacteria 501 2.3e-137   NTclustered gi|2737763816|gb|CP121194.1| 3035702 g194961 i0 96.99 264.234113712375 299 8 100 1 1 299 662671 662374 Edaphobacter paludis strain DSM 109919 chromosome, complete genome blastn 79006 501 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Edaphobacter Edaphobacter paludis
15232583 15232583 PRJNA758088_P_NODE_51912_length_615_cov_1.900369_g45166_i0 PRJNA758088 51912 615 1.900369 11.68726935 Tunturiibacter 3154218 Bacteria Bacteria 1020 0   NTclustered gi|2304905231|gb|CP073696.1| 2051959 g45166 i0 96.585 103.547967479675 615 21 100 0 1 615 3200376 3199762 Tunturiibacter lichenicola strain DSM 104462 chromosome, complete genome blastn 63682 1020 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Tunturiibacter Tunturiibacter lichenicola
16038319 16038319 PRJNA758088_P_NODE_206013_length_296_cov_4.757848_g199042_i0 PRJNA758088 206013 296 4.757848 14.08323008 Edaphobacter paludis 3035702 Bacteria Bacteria 542 1.34e-149   NTclustered gi|2737763816|gb|CP121194.1| 3035702 g199042 i0 99.662 107.449324324324 296 1 100 0 1 296 663004 663299 Edaphobacter paludis strain DSM 109919 chromosome, complete genome blastn 31805 542 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Edaphobacter Edaphobacter paludis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;