RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA758088" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA758088 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8390279 8390279 PRJNA758088_P_NODE_29547_length_883_cov_2.217284_g23957_i0 PRJNA758088 29547 883 2.217284 19.57861772 Gammaretrovirus murleu 3428959 Viruses Viruses 1524 0   NTclustered gi|38155068|gb|AY349138.1| 11786 g23957 i0 97.848 99.6704416761042 883 17 100 2 1 883 967 87 Murine leukemia virus isolate SP(B)1-1 truncated gag polypeptide (gag) mRNA, complete cds, alternatively spliced blastn 88009 1524 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
14763329 14763329 PRJNA758088_P_NODE_122672_length_379_cov_1.006536_g115701_i0 PRJNA758088 122672 379 1.006536 3.81477144 Alpharetrovirus avileu 3426267 Viruses Viruses 582 1.04e-161   NTclustered gi|308525075|gb|HQ148554.1| 11864 g115701 i0 100 101.348284960422 315 0 100 0 65 379 3124 2810 Avian leukosis virus strain JL09H01, complete genome blastn 38411 582 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus avileu
24965117 24965117 PRJNA758088_P_NODE_56100_length_586_cov_1.645224_g49276_i0 PRJNA758088 56100 586 1.645224 9.64101264 Gammaretrovirus murleu 3428959 Viruses Viruses 1005 0   NTclustered gi|1167936530|gb|KY574504.1| 11786 g49276 i0 97.611 99.9965870307167 586 14 100 0 1 586 5960 6545 Murine leukemia virus isolate AKR13, complete genome blastn 58598 1005 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;