RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA758088" and tax_clade = "Stenosarchaea group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 9 ✖

bioproject 1

  • PRJNA758088 · 9 ✖

analysis 1

  • blastn · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3755432 3755432 PRJNA758088_P_NODE_306023_length_248_cov_0.880000_g299052_i0 PRJNA758088 306023 248 0.88 2.1824 Methanoregula 395331 Archaea Archaea 459 1.13e-124   NTclustered gi|432136161|gb|CP003167.1| 593750 g299052 i0 100 113.229838709677 248 0 100 0 1 248 548781 549028 Methanoregula formicica SMSP, complete genome blastn 28081 459 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula formicica
5032091 5032091 PRJNA758088_P_NODE_342584_length_244_cov_0.900585_g335613_i0 PRJNA758088 342584 244 0.900585 2.1974274 Methanothrix 2222 Archaea Archaea 296 9.21e-76   NTclustered gi|2133328945|gb|CP086219.1| 90426 g335613 i0 92.019 3.68852459016393 213 14 86 2 1 211 416226 416437 MAG: Methanothrix sp. isolate MAG 281 chromosome blastn 900 296 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
7116224 7116224 PRJNA758088_P_NODE_328246_length_245_cov_1.331395_g321275_i0 PRJNA758088 328246 245 1.331395 3.26191775 Methanothrix sp. 90426 Archaea Archaea 409 1.1399999999999998e-109   NTclustered gi|2626216449|emb|OY821645.1| 90426 g321275 i0 96.748 25.5183673469388 246 6 100 2 1 245 826893 827137 MAG: Methanothrix sp. isolate d1628e35-7b52-4540-a147-c2ca1342adce genome assembly, chromosome: 1 blastn 6252 409 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
8389244 8389244 PRJNA758088_P_NODE_224267_length_284_cov_2.075829_g217296_i0 PRJNA758088 224267 284 2.075829 5.89535436 Methanosarcina horonobensis 418008 Archaea Archaea 486 6.069999999999999e-133   NTclustered gi|805380606|gb|CP009516.1| 1434110 g217296 i0 97.865 196.334507042254 281 6 99 0 4 284 47831 48111 Methanosarcina horonobensis HB-1, complete genome blastn 55759 486 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina horonobensis
8391026 8391026 PRJNA758088_P_NODE_345727_length_243_cov_0.905882_g338756_i0 PRJNA758088 345727 243 0.905882 2.20129326 uncultured Methanoregula sp. 1005933 Archaea Archaea 147 9.77e-31   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g338756 i0 80.978 0.757201646090535 184 35 76 0 60 243 1153198 1153015 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 184 147 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
9663652 9663652 PRJNA758088_P_NODE_171208_length_324_cov_1.135458_g164237_i0 PRJNA758088 171208 324 1.135458 3.67888392 Methanothrix sp. 90426 Archaea Archaea 588 1.88e-163   NTclustered gi|2626216449|emb|OY821645.1| 90426 g164237 i0 99.383 232.04012345679 324 2 100 0 1 324 826179 825856 MAG: Methanothrix sp. isolate d1628e35-7b52-4540-a147-c2ca1342adce genome assembly, chromosome: 1 blastn 75181 588 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
12216946 12216946 PRJNA758088_P_NODE_318770_length_247_cov_0.873563_g311799_i0 PRJNA758088 318770 247 0.873563 2.15770061 Methanoregula formicica 882104 Archaea Archaea 329 9.21e-86   NTclustered gi|432136161|gb|CP003167.1| 593750 g311799 i0 90.688 9.95141700404858 247 23 100 0 1 247 2798639 2798885 Methanoregula formicica SMSP, complete genome blastn 2458 329 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula formicica
16506729 16506729 PRJNA758088_P_NODE_347073_length_243_cov_0.905882_g340102_i0 PRJNA758088 347073 243 0.905882 2.20129326 Methanothrix 2222 Archaea Archaea 438 1.4399999999999996e-118   NTclustered gi|2133328945|gb|CP086219.1| 90426 g340102 i0 99.177 3.88477366255144 243 2 100 0 1 243 781951 782193 MAG: Methanothrix sp. isolate MAG 281 chromosome blastn 944 438 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
22881104 22881104 PRJNA758088_P_NODE_24798_length_987_cov_2.513129_g19738_i0 PRJNA758088 24798 987 2.513129 24.80458323 Methanoregula 395331 Archaea Archaea 1659 0   NTclustered gi|432136161|gb|CP003167.1| 593750 g19738 i0 96.967 210.716312056738 989 28 100 2 1 987 547170 548158 Methanoregula formicica SMSP, complete genome blastn 207977 1659 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula formicica

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;