RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA758087" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA758087 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2009023 2009023 PRJNA758087_P_NODE_12962_length_851_cov_4.670951_g11781_i0 PRJNA758087 12962 851 4.670951 39.74979301 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 939 0   NTclustered gi|575456455|gb|CP007128.1| 861299 g11781 i0 87.5 81.2326674500588 832 80 96 21 32 851 3042306 3043125 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 69129 939 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
4561952 4561952 PRJNA758087_P_NODE_31544_length_387_cov_1.726115_g30224_i0 PRJNA758087 31544 387 1.726115 6.68006505 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 292 2e-74   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g30224 i0 87.649 49.7984496124031 251 31 65 0 27 277 1104175 1104425 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 19272 292 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
22410784 22410784 PRJNA758087_P_NODE_28318_length_440_cov_3.356948_g26998_i0 PRJNA758087 28318 440 3.356948 14.7705712 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 407 7.88e-109   NTclustered gi|575456455|gb|CP007128.1| 861299 g26998 i0 84.783 25.0818181818182 414 54 93 8 1 411 3043865 3043458 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 11036 407 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;