RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA758087" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 8 ✖

bioproject 1

  • PRJNA758087 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3285090 3285090 PRJNA758087_P_NODE_43003_length_245_cov_0.895349_g41683_i0 PRJNA758087 43003 245 0.895349 2.19360505 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 368 1.93e-97   NTclustered gi|389546593|gb|JQ401521.1| 100233 g41683 i0 98.558 72.5551020408163 208 3 85 0 1 208 208 1 Uncultured Planctomycetaceae bacterium clone CNY_01638 16S ribosomal RNA gene, partial sequence blastn 17776 368 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
5836930 5836930 PRJNA758087_P_NODE_26625_length_470_cov_12.607053_g25305_i0 PRJNA758087 26625 470 12.607053 59.2531491 Fuerstiella marisgermanici 1891926 Bacteria Bacteria 117 1.6e-21   NTclustered gi|1140105870|gb|CP017641.1| 1891926 g25305 i0 88.119 20.2659574468085 101 8 21 4 1 99 5362463 5362365 Fuerstiella marisgermanici strain NH11 chromosome, complete genome blastn 9525 117 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Fuerstiella Fuerstiella marisgermanici
7111658 7111658 PRJNA758087_P_NODE_10846_length_966_cov_6.207167_g9746_i0 PRJNA758087 10846 966 6.207167 59.96123322 Maioricimonas rarisocia 2528026 Bacteria Bacteria 797 0   NTclustered gi|1712603021|gb|CP036275.1| 2528026 g9746 i0 82.434 145.861283643892 945 135 96 26 1 923 1843759 1844694 Maioricimonas rarisocia strain Mal4 chromosome, complete genome blastn 140902 797 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Maioricimonas Maioricimonas rarisocia
17311049 17311049 PRJNA758087_P_NODE_11594_length_924_cov_2.740306_g10464_i0 PRJNA758087 11594 924 2.740306 25.32042744 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 1110 0   NTclustered gi|2874254106|emb|OY970189.1| 100233 g10464 i0 89.011 134.677489177489 910 83 97 16 1 899 5937549 5936646 MAG: uncultured Planctomycetaceae bacterium isolate MFD09603.bin.2.127 genome assembly, chromosome: 1 blastn 124442 1110 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
17311370 17311370 PRJNA758087_P_NODE_21594_length_575_cov_9.426295_g20280_i0 PRJNA758087 21594 575 9.426295 54.20119625 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 444 8.01e-120   NTclustered gi|2874253749|emb|OY969623.1| 1914239 g20280 i0 83.333 362.766956521739 498 66 86 11 33 524 7050206 7050692 MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 blastn 208591 444 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
18585329 18585329 PRJNA758087_P_NODE_29495_length_419_cov_8.104046_g28175_i0 PRJNA758087 29495 419 8.104046 33.95595274 Paludisphaera borealis 1387353 Bacteria Bacteria 198 4.89e-46   NTclustered gi|1133581311|gb|CP019082.1| 1387353 g28175 i0 79.522 0.699284009546539 293 49 69 10 29 316 5130261 5129975 Paludisphaera borealis strain PX4 chromosome, complete genome blastn 293 198 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Paludisphaera Paludisphaera borealis
21136049 21136049 PRJNA758087_P_NODE_30857_length_398_cov_0.947692_g29537_i0 PRJNA758087 30857 398 0.947692 3.77181416 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 730 0   NTclustered gi|389546593|gb|JQ401521.1| 100233 g29537 i0 99.749 99.9321608040201 398 1 100 0 1 398 750 353 Uncultured Planctomycetaceae bacterium clone CNY_01638 16S ribosomal RNA gene, partial sequence blastn 39773 730 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
22410818 22410818 PRJNA758087_P_NODE_29258_length_423_cov_14.971429_g27938_i0 PRJNA758087 29258 423 14.971429 63.32914467 Rhodopirellula sp. P2 2127060 Bacteria Bacteria 52.8 0.041   NTclustered gi|2447573959|gb|CP118225.1| 2127060 g27938 i0 100 0.066193853427896 28 0 7 0 228 255 1837395 1837422 Rhodopirellula sp. P2 chromosome, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Rhodopirellula Rhodopirellula sp. P2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;