RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA757618" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA757618 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10936658 10936658 PRJNA757618_P_NODE_33969_length_249_cov_0.880682_g32917_i0 PRJNA757618 33969 249 0.880682 2.19289818 Opitutus sp. GAS368 1882749 Bacteria Bacteria 333 7.189999999999999e-87   NTclustered gi|1085764882|emb|LT629735.1| 1882749 g32917 i0 90.763 6.61044176706827 249 23 100 0 1 249 1251079 1251327 Opitutus sp. GAS368 genome assembly, chromosome: I blastn 1646 333 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. GAS368
10936950 10936950 PRJNA757618_P_NODE_9749_length_358_cov_1.073684_g8697_i0 PRJNA757618 9749 358 1.073684 3.84378872 Luteolibacter sp. Populi 3230487 Bacteria Bacteria 473 6.11e-129   NTclustered gi|2774618348|gb|CP161812.1| 3230487 g8697 i0 90.503 275.991620111732 358 34 100 0 1 358 1320102 1319745 Luteolibacter sp. Populi chromosome, complete genome blastn 98805 473 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. Populi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;