RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA757618" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA757618 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
732473 732473 PRJNA757618_P_NODE_30581_length_251_cov_0.865169_g29529_i0 PRJNA757618 30581 251 0.865169 2.17157419 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 183 7.73e-42   NTclustered gi|2874253978|emb|OY970303.1| 412054 g29529 i0 79.921 1.01195219123506 254 48 100 2 1 251 787443 787696 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 254 183 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
13486562 13486562 PRJNA757618_P_NODE_47471_length_242_cov_0.923077_g46419_i0 PRJNA757618 47471 242 0.923077 2.23384634 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 309 1.17e-79   NTclustered gi|575456455|gb|CP007128.1| 861299 g46419 i0 89.712 34.5495867768595 243 23 100 2 1 242 3864056 3864297 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 8361 309 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
21135059 21135059 PRJNA757618_P_NODE_29477_length_251_cov_0.876404_g28425_i0 PRJNA757618 29477 251 0.876404 2.19977404 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 167 7.789999999999999e-37   NTclustered gi|575456455|gb|CP007128.1| 861299 g28425 i0 81.221 0.848605577689243 213 34 84 4 42 251 3440775 3440566 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 213 167 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
24959092 24959092 PRJNA757618_P_NODE_30480_length_251_cov_0.865169_g29428_i0 PRJNA757618 30480 251 0.865169 2.17157419 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 180 1e-40   NTclustered gi|2874253728|emb|OY969570.1| 412054 g29428 i0 86.228 5.60159362549801 167 21 66 2 1 166 4245438 4245603 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 1406 180 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;