RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA757618" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA757618 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4561113 4561113 PRJNA757618_P_NODE_40384_length_245_cov_2.063953_g39332_i0 PRJNA757618 40384 245 2.063953 5.05668485 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 387 5.34e-103   NTclustered gi|325195057|emb|FR825852.1| 890382 g39332 i0 95.122 98 246 11 100 1 1 245 405 160 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 24010 387 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
5835724 5835724 PRJNA757618_P_NODE_11665_length_332_cov_1.166023_g10613_i0 PRJNA757618 11665 332 1.166023 3.87119636 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 573 5.399999999999999e-159   NTclustered gi|2651357788|gb|PP174303.1| 41631 g10613 i0 97.885 97.9939759036145 331 7 99 0 1 331 1885 2215 Colpoda sp. isolate CIL1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 32534 573 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
22410075 22410075 PRJNA757618_P_NODE_44138_length_244_cov_0.900585_g43086_i0 PRJNA757618 44138 244 0.900585 2.1974274 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 289359 SAR_Eukaryotes SAR_Eukaryotes 379 8.889999999999998e-101   NTclustered gi|53829571|gb|AY582838.1| 289359 g43086 i0 94.672 89.4262295081967 244 13 100 0 1 244 226 469 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 HSP70 gene, partial cds blastn 21820 379 1 Eukaryota Sar             Stramenopile sp. ex Nuclearia delicatula CCAP1552/1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;