RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA757618" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA757618 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7111601 7111601 PRJNA757618_P_NODE_8846_length_375_cov_2.450331_g7794_i0 PRJNA757618 8846 375 2.450331 9.18874125 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 52.8 0.036   NTclustered gi|1031970221|gb|CP015655.1| 85057 g7794 i0 100 0.0746666666666667 28 0 7 0 315 342 50510 50537 Trypanosoma cruzi cruzi strain Sylvio X10/cl1 chromosome TcI5, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
10936265 10936265 PRJNA757618_P_NODE_11629_length_332_cov_1.386100_g10577_i0 PRJNA757618 11629 332 1.3861 4.601852 Trypanosoma conorhini 83891 Euglenozoa other_Eukaryota 239 2.24e-58   NTclustered gi|1673142477|ref|XM_029374000.1| 83891 g10577 i0 81.848 33.5 303 37 89 13 34 327 420 127 Trypanosoma conorhini 60S ribosomal protein L23 (Tco025E_07133), partial mRNA blastn 11122 239 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma conorhini
10936886 10936886 PRJNA757618_P_NODE_6109_length_499_cov_1.640845_g5059_i0 PRJNA757618 6109 499 1.640845 8.18781655 Acrasis rosea 43695 Heterolobosea other_Eukaryota 451 4.11e-122   NTclustered gi|12083876|gb|AF190771.1|AF190771 43695 g5059 i0 84.076 78.6292585170341 471 71 94 3 1 469 613 1081 Acrasis rosea elongation factor 1 alpha (tef1) gene, partial cds blastn 39236 451 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis rosea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;