RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA757618" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA757618 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13486519 13486519 PRJNA757618_P_NODE_43851_length_244_cov_0.906433_g42799_i0 PRJNA757618 43851 244 0.906433 2.21169652 Candidatus Saccharimonas sp. 1917697 Bacteria Bacteria 396 8.829999999999997e-106   NTclustered gi|2070586293|gb|CP076101.2| 1917697 g42799 i0 95.902 1 244 10 100 0 1 244 151622 151865 MAG: Candidatus Saccharimonas sp. isolate JCVI_32_bin.49 chromosome, complete genome blastn 244 396 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Saccharimonas Candidatus Saccharimonas sp.
17310798 17310798 PRJNA757618_P_NODE_43094_length_244_cov_0.912281_g42042_i0 PRJNA757618 43094 244 0.912281 2.22596564 Candidatus Southlakia epibionticum 3043284 Bacteria Bacteria 379 8.889999999999998e-101   NTclustered gi|2516687873|gb|CP124550.1| 3043284 g42042 i0 94.672 1.98770491803279 244 13 100 0 1 244 772135 771892 Candidatus Southlakia epibionticum strain ML1 chromosome, complete genome blastn 485 379 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Southlakia Candidatus Southlakia epibionticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;