RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA756891" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA756891 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2008002 2008002 PRJNA756891_P_NODE_11882_length_253_cov_1.455556_g11813_i0 PRJNA756891 11882 253 1.455556 3.68255668 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 226 1.2799999999999999e-54   NTclustered gi|675207712|ref|XM_008914493.1| 761204 g11813 i0 88.36 100.355731225296 189 20 74 2 60 247 28 215 Phytophthora parasitica INRA-310 hsp70-like protein partial mRNA blastn 25390 226 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
8385283 8385283 PRJNA756891_P_NODE_14567_length_245_cov_0.895349_g14498_i0 PRJNA756891 14567 245 0.895349 2.19360505 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 115 2.7800000000000003e-21   NTclustered gi|669140187|ref|XM_008607440.1| 1156394 g14498 i0 93.506 7.46938775510204 77 5 31 0 18 94 1428 1504 Saprolegnia diclina VS20 ATP-binding cassette, subfamily F, member 2 mRNA blastn 1830 115 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
13956230 13956230 PRJNA756891_P_NODE_16651_length_241_cov_0.916667_g16582_i0 PRJNA756891 16651 241 0.916667 2.20916747 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 171 5.74e-38   NTclustered gi|2795048616|ref|XM_067931964.1| 4785 g16582 i0 79.668 6.91286307053942 241 45 99 4 1 239 88 326 Phytophthora cinnamomi ubiquitin-conjugating enzyme E2-16 kDa (IUM83_07649), partial mRNA blastn 1666 171 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
20328691 20328691 PRJNA756891_P_NODE_13736_length_247_cov_0.885057_g13667_i0 PRJNA756891 13736 247 0.885057 2.18609079 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 130 1e-25   NTclustered gi|2795015867|ref|XM_067925725.1| 4785 g13667 i0 80 49.6072874493927 185 29 74 4 25 208 283 460 Phytophthora cinnamomi protein arginine N-methyltransferase 1 (IUM83_01842), partial mRNA blastn 12253 130 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
23685004 23685004 PRJNA756891_P_NODE_14139_length_246_cov_0.890173_g14070_i0 PRJNA756891 14139 246 0.890173 2.18982558 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|813150940|ref|XM_012345727.1| 695850 g14070 i0 100 1.25609756097561 29 0 12 0 1 29 817 845 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 309 54.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
24958574 24958574 PRJNA756891_P_NODE_420_length_1159_cov_4.969613_g384_i0 PRJNA756891 420 1159 4.969613 57.59781467 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 60.2 7.06e-4   NTclustered gi|2795037809|ref|XM_067935122.1| 4785 g384 i0 91.111 0.168248490077653 45 3 4 1 60 103 97 141 Phytophthora cinnamomi transcriptional regulator ATRX (IUM83_10609), partial mRNA blastn 195 60.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;