RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA756891" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA756891 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6306316 6306316 PRJNA756891_P_NODE_4905_length_381_cov_1.500000_g4836_i0 PRJNA756891 4905 381 1.5 5.715 Metazoa 33208 Nematoda Nematoda 320 9.02e-83   NTclustered gi|268537031|ref|XM_002633606.1| 6238 g4836 i0 84.688 83.740157480315 320 49 84 0 23 342 374 55 Caenorhabditis briggsae Protein CBR-RPS-23 (Cbr-rps-23), partial mRNA blastn 31905 320 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
7110664 7110664 PRJNA756891_P_NODE_10026_length_276_cov_1.201970_g9957_i0 PRJNA756891 10026 276 1.20197 3.3174372 Trichinella spiralis 6334 Nematoda Nematoda 56.5 0.002   NTclustered gi|102140989|gb|AC186776.1| 6334 g9957 i0 100 0.108695652173913 30 0 11 0 59 88 27430 27459 Trichinella spiralis chromosome UNK clone TS195-38H12, complete sequence blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
13956211 13956211 PRJNA756891_P_NODE_12811_length_249_cov_1.903409_g12742_i0 PRJNA756891 12811 249 1.903409 4.73948841 root 1 Root_unresolved Root_unresolved 56.5 0.002   NTclustered gi|1158591669|ref|XM_020449430.1| 7209 g12742 i0 100 12.9277108433735 30 0 12 0 51 80 591 620 Loa loa hypothetical protein partial mRNA blastn 3219 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
19859073 19859073 PRJNA756891_P_NODE_6796_length_329_cov_1.203125_g6727_i0 PRJNA756891 6796 329 1.203125 3.95828125 Pristionchus pauli 376545 Nematoda Nematoda 198 3.76e-46   NTclustered gi|150982019|gb|EF634598.1| 376545 g6727 i0 79.715 3.81762917933131 281 51 84 6 3 280 314 37 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 1256 198 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
21134542 21134542 PRJNA756891_P_NODE_13237_length_248_cov_1.520000_g13168_i0 PRJNA756891 13237 248 1.52 3.7696 Ancylostoma caninum 29170 Nematoda Nematoda 185 2.1199999999999998e-42   NTclustered gi|858935405|gb|KP686396.1| 29170 g13168 i0 80.567 10.0201612903226 247 42 98 6 5 248 1463 1220 Ancylostoma caninum HSP-1 (hsp-1) mRNA, complete cds blastn 2485 185 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;